BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZD11RM1.SCF screened BAC_end
         (956 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1507                                                        1162   0.0  

>3x_Contig1507 
          Length = 11359

 Score = 1162 bits (586), Expect = 0.0
 Identities = 666/688 (96%), Gaps = 4/688 (0%)
 Strand = Plus / Minus

                                                                         
Query: 44    gcttgcgtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttc 103
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10023 gcttgcgtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttc 9964

                                                                         
Query: 104   caaaatcgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgac 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9963  caaaatcgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgac 9904

                                                                         
Query: 164   tacctgattttctgtaaataccttcggccatcatatattcagggtctgattcgatatagt 223
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9903  tacctgattttctgtaaatac-ttcggccatcatatattcagggtctgattcgatatagt 9845

                                                                         
Query: 224   tgatgcatgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaacca 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9844  tgatgcatgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaacca 9785

                                                                         
Query: 284   gggatgatccatagagagtttgtccatcagaactggaagatgataaactgttccttggaa 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9784  gggatgatccatagagagtttgtccatcagaactggaagatgataaactgttccttggaa 9725

                                                                         
Query: 344   cagagtcattcgacgcggaatagggaattgggaaaagtttcaggtcatcaaattcatttg 403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9724  cagagtcattcgacgcggaatagggaattgggaaaagtttcaggtcatcaaattcatttg 9665

                                                                         
Query: 404   gattctgtagcattggagcactaatttctatggatttggaagaatttggattgacctgtc 463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9664  gattctgtagcattggagcactaatttctatggatttggaagaatttggattgacctgtc 9605

                                                                         
Query: 464   ttacattagtattcccacttccgaanagtttccaaaatcgaggttttgcaatactgctat 523
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9604  ttacattagtattcccacttccgaaaagtttccaaaatcgaggttttgcaatactgctat 9545

                                                                         
Query: 524   tggatgtagaaaggagtttgtttctagtaaggcttagagcattattgcttncgttgaaat 583
             ||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 9544  tggatgtagaagggagttggtttctagtagggcttagagcattattgcttccgttgaaat 9485

                                                                         
Query: 584   -cacctcgtatgcgtcgtcagttaatgatttcttgtgatgtcgtcgttaattttgagatc 642
              ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 9484  ccacctcgtatgcgtcgtcagttaatga-ttcttgtgatgtcgtcgttaa-tttgagatc 9427

                                                                         
Query: 643   cggtttttcatttcaaaggctttcggtttctgacctcaaaggccctttttgaaactttaa 702
             | |||||||| ||| ||||  ||||||||||||| |||||| | |||||  || ||||| 
Sbjct: 9426  ccgtttttcaattcgaagggcttcggtttctgacgtcaaagtctcttttgtaatctttag 9367

                                         
Query: 703   tttttcaaggtcagcagttaattgagcc 730
             |||||||| |||||||||||||||||||
Sbjct: 9366  tttttcaatgtcagcagttaattgagcc 9339


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7866
Number of Sequences: 1807
Number of extensions: 7866
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)