BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD12FM1.SCF screened BAC_end
(1038 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 553 e-157
>3x_Contig1608
Length = 13037
Score = 553 bits (279), Expect = e-157
Identities = 282/283 (99%)
Strand = Plus / Plus
Query: 85 gcgataatatcatcgtttgtagtcaatttgattaattgttctaaagccgcatccctcatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 gcgataatatcatcgtttgtagtcaatttgattaattgttctaaagccgcatccctcatg 5057
Query: 145 cttggaactttgaccataatgtttctaaagttatcacctaacaaagttgatacctctaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 cttggaactttgaccataatgtttctaaagttatcacctaacaaagttgatacctctaaa 5117
Query: 205 ttattcaaatcttgtgaaactatacagagatccgtcaatattttcaagtaccagtcgaag 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 ttattcaaatcttgtgaaactatacagagatccgtcaatattttcaagtaccagtcgaag 5177
Query: 265 tcaccattgatattctcgtaatcatttatacaacagacatctaagacagtcttggcaact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcaccattgatattctcgtaatcatttatacaacagacatctaagacagtcttggcaact 5237
Query: 325 ttcactttatagtttaaaggaatgtctatttgaacaacttgat 367
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5238 ttcactttatagtttaaaggaatgtctatttgaacaccttgat 5280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,779
Number of Sequences: 1807
Number of extensions: 13779
Number of successful extensions: 135
Number of sequences better than 1.0e-20: 1
length of query: 1038
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1022
effective length of database: 10,329,639
effective search space: 10556891058
effective search space used: 10556891058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)