BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZD12RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1170 0.0
>3x_Contig1641
Length = 13261
Score = 1170 bits (590), Expect = 0.0
Identities = 681/706 (96%), Gaps = 4/706 (0%)
Strand = Plus / Plus
Query: 44 gcttaatggaatgtctcgattctttcagtgaagatccggtaatcagcagcttatccacat 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10159 gcttaatggaatgtctcgattcttccagtgaagatccggtaatcagcagcttatccacat 10218
Query: 104 tagtcaatctacaacggttcaatatattggataaatccgtctcgtgctgcttcttgccat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10219 tagtcaatctacaacggttcaatatattggataaatccgtctcgtgctgcttcttgccat 10278
Query: 164 ggtatttccctttgaacatgtgatcagagatattgaacccaatgtcaaagtactttattt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 10279 ggtatttccctttgaacatgtgatcagagatattgaacccaatgtcaaagtaccttatct 10338
Query: 224 gtttcaaacctgtcatcttctgaagtgctctggacatatacagtgtagaagctgtttcac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10339 gtttcaaacctgtcatcttctgaagtgctctggacatatacagtgtagaagctgtttcac 10398
Query: 284 agtgatatacaatggccataatgaaccgaaaatatgccaaacaaacaggaagtcctttta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10399 agtgatatacaatggccataatgaaccgaaaatatgccaaacaaacaggaagtcctttta 10458
Query: 344 tcgttctgaagtgggatgagttgcatatcctcttgcgcatcgtgagatggcttgtacaga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10459 tcgttctgaagtgggatgagttgcatatcctcttgcgcatcgtgagatggcttgtacaga 10518
Query: 404 attttcgagtgttacccggatgtaaggttaagctccactctgtgactcaagtccgcatgg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10519 attttcgagtgttacccggatgtaaggttaagctccactctgtgactcaagtccgcatgg 10578
Query: 464 aaacattcacagaccgtacatgccacacgatgtccaaaaatatcgtgtaatgggtatctt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10579 aaacattcacagaccgtacatgccacacgatgtccaaaaatatcgtgtaatgggtatctt 10638
Query: 524 tccgagcctatccaatggcctaccaacgcacttatcaccttccggagtgcattcccctac 583
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 10639 ccgaagcctatccaatggcctaccaacgcacttatcacctcccggagtgcatccccctac 10698
Query: 584 cttccataagcttaattttgacacattctacacactactgcaatagctttccgaaagcgt 643
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 10699 ctcccataagctt-attttgacacattctacacactactgcaatagctttccgaaggcgt 10757
Query: 644 agactaacgca-cagtcccaaaaccaaccggggaccccattttgcagaaagttcaccgac 702
||||||||||| ||||||| |||||||||||||| ||| |||||| |||| ||| |||
Sbjct: 10758 agactaacgcaccagtccc-aaaccaaccggggaaccccatttgcaagaagtacacagac 10816
Query: 703 g-aaaaaacaaaaaaggacccttgaacgggaagatacaggaccctc 747
| ||||||||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 10817 gaaaaaaacaaaaaaagacacgtgaacggtaagatacaggaccctc 10862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,224
Number of Sequences: 1807
Number of extensions: 16224
Number of successful extensions: 424
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)