BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE01FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 581 e-166
>3x_Contig1698
Length = 21001
Score = 581 bits (293), Expect = e-166
Identities = 377/400 (94%), Gaps = 4/400 (1%)
Strand = Plus / Minus
Query: 86 atcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagttttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10296 atcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagttttc 10237
Query: 146 gtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcgcag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10236 gtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcgcag 10177
Query: 206 cctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaacgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10176 cctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaacgc 10117
Query: 266 agttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtatttgaaaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 10116 agttgagacatgcgagactatattaacatttctgtcatcgtggatatcgta-ttggaaat 10058
Query: 326 ttggcttcaatttcccccgtatgtttcatgatccacttagtcattttaccatggaaattg 385
|||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct: 10057 ttggcttcaa-ttcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatcg 9999
Query: 386 agagtagactttgtttttaaaatttgggcccgtttaagcccacctgnattattgcctaaa 445
||||||||| || |||||||| ||| || ||| |||||||| ||| |||||||||||||
Sbjct: 9998 agagtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaaa 9939
Query: 446 tttc-catctttgggaaatatcttaaaaacgtggtccaaa 484
|||| |||||||| | |||||| | ||| |||||||||||
Sbjct: 9938 tttctcatctttgtg-aatatcctcaaagcgtggtccaaa 9900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9284
Number of Sequences: 1807
Number of extensions: 9284
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)