BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE02FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 577 e-164
>3x_Contig1712
Length = 23668
Score = 577 bits (291), Expect = e-164
Identities = 488/524 (93%), Gaps = 24/524 (4%)
Strand = Plus / Plus
Query: 86 tctaagtagttgaggtatgggagatgtcaatatttccatttcttactacgaagtattttt 145
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4173 tctaagtagttgaggtatgggagatgtcaatatttccatgtcttactacgaagtattttt 4232
Query: 146 cgttaactttatacagtcgctaatctaatccactttactctccgatataaacaggctgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233 cgttaactttatacagtcgctaatctaatccactttactctccgatataaacaggctgaa 4292
Query: 206 tattttttggtagatcttaggcttcattaactataacaatttccaaaantcacttttcgg 265
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4293 tattttttggtagatcttaggcttcattaactataacaatttccaaaa-tcacttttcgg 4351
Query: 266 -tagtatcctttttttggacagcgccaagtttcacattgaatgttataagntgaaaactg 324
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct: 4352 ttagtatcctttttttggacagcgccaaggttcacattgaatgtattaagttgaaaactg 4411
Query: 325 gtgtttactaagatc-tttcatttcacaga-tgaactc-atattcaac-agtatactt-t 379
|||||||||||||| |||||||||||||| ||||||| |||| |||| ||||||||| |
Sbjct: 4412 ttgtttactaagatcttttcatttcacagattgaactcaatatccaacaagtatacttct 4471
Query: 380 nctggcatttagatc-attcactataaaaaa--ggcgaagagt-atat-aacatcggata 434
|||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 4472 cctggcatttagatcaattcactataaaaaaagggcgaagagtaatataaacatcggata 4531
Query: 435 -ttaatctcaa-tacagataggcaaag-tcaa-tacgca-tagctaca-ttttcacgtct 488
|||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||||||
Sbjct: 4532 tttaatctcaattacagataggcaaagttcaattacgcattagctacatttttcacgtct 4591
Query: 489 tttattttctg-ccttc-attcattgtccttc-atttgacttcgatcaattcctta-aaa 544
|||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 4592 tttaatttctgcccttcaattcattgtccttcaatttgacttcgatcaattccttagaac 4651
Query: 545 caataatgccttaca-aaggcaat-taatttggttttaccacca 586
|||||||| || ||| |||||||| |||||||||||||||||||
Sbjct: 4652 caataatgactaacacaaggcaatctaatttggttttaccacca 4695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9586
Number of Sequences: 1807
Number of extensions: 9586
Number of successful extensions: 641
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)