BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE02RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1494 1590 0.0
>3x_Contig1494
Length = 10561
Score = 1590 bits (802), Expect = 0.0
Identities = 858/872 (98%), Gaps = 4/872 (0%)
Strand = Plus / Minus
Query: 38 actagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacactc 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8852 actagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacactc 8793
Query: 98 aggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaac 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8792 aggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaac 8733
Query: 158 tgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactta 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8732 tgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactta 8673
Query: 218 gtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaaa 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8672 gtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaaa 8613
Query: 278 aacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaaccc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8612 aacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaaccc 8553
Query: 338 ttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaat 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8552 ttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaat 8493
Query: 398 cccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataataa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8492 cccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataataa 8433
Query: 458 tgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatcg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8432 tgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatcg 8373
Query: 518 ccgtcatgaacggatagttatctgggattcactagaattgatactatgttgtatccttag 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8372 ccgtcatgaacggatagttatctgggattcactagaattgatactatgttgtatccttag 8313
Query: 578 tttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatcta 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 tttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatcta 8253
Query: 638 cgaatatctccgtcacacacaaccaatagtaacatgaaaagatatctaagtttgaattac 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8252 cgaatatctccgtcacacacaaccaatagtaacatgaaaagatatctaagtttgaattac 8193
Query: 698 actccagacgtanttaccacggatttcgagttgtcctcanagaatgttaacaatcgcagc 757
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8192 actccagacgta-ttaccacggatttcgagttgtcctcaaagaatgttaacaatcgcagc 8134
Query: 758 aatagagcaagcattgaagtattactgtatttgcttctatcatttgaagaagaagaac-g 816
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 8133 aatagagcaagcattgaagtattactgtatttgcttctatcatttgaagaag-agaacgg 8075
Query: 817 tttttaaaataaagggtncattcgtctgtaatagcccgtaatttcggatcagagttttct 876
||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||
Sbjct: 8074 tttttaaaataaagggtccatccgtctgtaatagccgtaaatttcggatcagatgtttc- 8016
Query: 877 tttttttccctttcgtttactactcatcgggt 908
|||||||||||| |||| ||||||||||||||
Sbjct: 8015 tttttttcccttccgttaactactcatcgggt 7984
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,226
Number of Sequences: 1807
Number of extensions: 10226
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)