BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE03RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 1639 0.0
>3x_Contig1305
Length = 9229
Score = 1639 bits (827), Expect = 0.0
Identities = 859/866 (99%), Gaps = 3/866 (0%)
Strand = Plus / Plus
Query: 49 gtccctacatcgaagcaaccctcatattcctttttctcacccagcttatttttcaaatac 108
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5088 gtccctacatcgaagcaaccctcatattcccttttctcacccagcttatttttcaaatac 5147
Query: 109 tctttgaaaggagacttgttatatgtcatgttggtaatgtactccgtaattggtaaattg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 tctttgaaaggagacttgttatatgtcatgttggtaatgtactccgtaattggtaaattg 5207
Query: 169 gaactttctattagcttgctgttcaaaacagtaagtttagctttatagtactcgtaaaga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5208 gaactttctattagcttgctgttcaaaacagtaagtttagctttatagtactcgtaaaga 5267
Query: 229 aatgtcaaatcttgggtggaactcgcacccagtttttcaagcaagagaacctttgtatca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268 aatgtcaaatcttgggtggaactcgcacccagtttttcaagcaagagaacctttgtatca 5327
Query: 289 gggtcttcgatggatgagatgagtcttttcacatctaagtttaaattgtttattaattgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5328 gggtcttcgatggatgagatgagtcttttcacatctaagtttaaattgtttattaattgt 5387
Query: 349 aaaacgtcgcttacagtgtcatcgttataatctttcaaagctgatgaaatatcatcagtc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 aaaacgtcgcttacagtgtcatcgttataatctttcaaagctgatgaaatatcatcagtc 5447
Query: 409 agcatttctttagagtaagtatcgggtagctcttggaaatgagtattcaggtaatttatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 agcatttctttagagtaagtatcgggtagctcttggaaatgagtattcaggtaatttatg 5507
Query: 469 agccttttttgatctgtttgtcttagtatttcgagcaatggggtcacttcttttgtcttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5508 agccttttttgatctgtttgtcttagtatttcgagcaatggggtcacttcttttgtcttt 5567
Query: 529 tcatatatggctattaaagtttctgaatgttcttttttatgcttagaaagctctttagca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 tcatatatggctattaaagtttctgaatgttcttttttatgcttagaaagctctttagca 5627
Query: 589 atttcttggtaactagtcgcctcgtattcatcaacatttgaactgcctttagcgatgtta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 atttcttggtaactagtcgcctcgtattcatcaacatttgaactgcctttagcgatgtta 5687
Query: 649 tcacgtaatagaattaaatcgagcgataaataaacgttcgcactatcttttaagctatcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 tcacgtaatagaattaaatcgagcgataaataaacgttcgcactatcttttaagctatcg 5747
Query: 709 gaacacgtttcttttagttgaaatttcaagtattgtatgatgttcagaacgtcattacac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 gaacacgtttcttttagttgaaatttcaagtattgtatgatgttcagaacgtcattacac 5807
Query: 769 ttgtgaactagcttcaatgaatgcaatttttttgaaaaatgctaat-acccattnagaat 827
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 5808 ttgtgaactagcttcaatgaatgcaatttttttg-aaaatgctaataacccattaggaat 5866
Query: 828 ccacaaatctccgtaaatgtcgaaaccaagtagggtaaattaatactctgatatctgcga 887
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 5867 ccacaaatctccgtaaatgtcgaaaccaagta-ggtaaattaatactctgatatctgcaa 5925
Query: 888 catcaatatatttgagccaggcatcg 913
||||||||||||||||||||||||||
Sbjct: 5926 catcaatatatttgagccaggcatcg 5951
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7846
Number of Sequences: 1807
Number of extensions: 7846
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)