BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE05FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 856 0.0
>3x_Contig1613
Length = 13977
Score = 856 bits (432), Expect = 0.0
Identities = 551/578 (95%), Gaps = 11/578 (1%)
Strand = Plus / Plus
Query: 83 ccatatacaaagccatacattcaggcgatgaagtaataccaggagtttcaaatctcgaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3043 ccatatacaaagccatacattcaggcgatgaagtaataccaggagtttcaaatctcgaaa 3102
Query: 143 caacgtattgcggatagttcgatttcaagagaagtttatagaactccgcttgcgcacttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3103 caacgtattgcggatagttcgatttcaagagaagtttatagaactccgcttgcgcacttg 3162
Query: 203 ggttagacaaatctttattagcttgctgttccttagtagccaaaacagcgtgtgatacag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3163 ggttagacaaatctttattagcttgctgttccttagtagccaaaacagcgtgtgatacag 3222
Query: 263 gtccatttgccggatcaatatcactcgaattaatcccgtttagttgcttgggctgctgaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3223 gtccatttgccggatcaatatcactcgaattaatcccgtttagttgcttgggctgctgaa 3282
Query: 323 cattttctgcaccacttgttgccccatttacagtgttcttcgagtcctccgaatgctgag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3283 cattttctgcaccacttgttgccccatttacagtgttcttcgagtcctccgaatgctgag 3342
Query: 383 aacctgntacaccattatgatccttgcctgtttggttcttgtccgaatataatctgtttt 442
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3343 aacctgtaacaccattatgatccttgcctgtttggttcttgtccgaatataatctgtttt 3402
Query: 443 gtagcacgctgcctgtaagaaaatgctttctattgcaagtccttaaaa-tgggcctgtc- 500
||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 3403 gtagcacgctgcctgtaagaaaatgctttctatgcaaagtccttaaaattggccctgtca 3462
Query: 501 agacaggggcttgacgaatc-acactcgagaagcgttctggccgcacaaaccag-aacac 558
|||||||||||||||||||| |||||||||||||||||| | |||||||||||| |||||
Sbjct: 3463 agacaggggcttgacgaatcaacactcgagaagcgttcttggcgcacaaaccagaaacac 3522
Query: 559 ccatcaacaccgg-agcgttatcttaccttttacactta--tagtcca-cgtaaaagtga 614
| ||||||||||| ||||| |||| ||||| ||||||| ||| || |||||||||||
Sbjct: 3523 caatcaacaccggaagcgtcatctagcctttaacacttaataagtacaccgtaaaagtga 3582
Query: 615 tttttt-aaag-acctgagctggaat-tacaacttttt 649
|||||| |||| ||||||||||| || |||||||||||
Sbjct: 3583 ttttttcaaagtacctgagctggtatatacaacttttt 3620
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6989
Number of Sequences: 1807
Number of extensions: 6989
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)