BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE06FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 763 0.0
>3x_Contig1340
Length = 7156
Score = 763 bits (385), Expect = 0.0
Identities = 497/520 (95%), Gaps = 11/520 (2%)
Strand = Plus / Plus
Query: 87 taaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatttatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 taaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatttatt 4777
Query: 147 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 tcattaaaatcgatatactatttacttataatatacgtatagtttagtggtatagatcta 4837
Query: 207 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 tggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagctcctt 4897
Query: 267 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccccaaa 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4898 tttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagcccaaag 4957
Query: 327 gtttgaatcttttgntagatcttgtgaaaca-gttgcgatggccaag-atcagctggg-a 383
|||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct: 4958 gtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctgggaa 5017
Query: 384 atcctcgaatt-atcgtcatcctc-agaagagattttcttggttctttatttgacatctt 441
||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 5018 atcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgacatctt 5077
Query: 442 ttcgcttgtacaacgctgatgtat-aagtccaagtgtatatcaggggctgtat-tatctt 499
|||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||||
Sbjct: 5078 ttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatatatctt 5137
Query: 500 gagtgaat-tatatgtagtattacttataa-gtttgccacta-ttcacgactttttgtag 556
|||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 5138 gagtgaatctatatgtagtattacttataaggtttgccactatttcagacctttttgtag 5197
Query: 557 cctttggatgattgtttattggttccggttaatgaaacgg 596
| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 5198 cttttggatgattgtttattgg-tccgggtaatgaaacgg 5236
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,748
Number of Sequences: 1807
Number of extensions: 15748
Number of successful extensions: 282
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)