BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE06RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1269 0.0
>3x_Contig1686
Length = 15382
Score = 1269 bits (640), Expect = 0.0
Identities = 755/784 (96%), Gaps = 8/784 (1%)
Strand = Plus / Minus
Query: 53 aagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggtcaacgt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13535 aagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggtcaacgt 13476
Query: 113 aatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaacgaaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13475 aatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaacgaaac 13416
Query: 173 tcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaatgttat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13415 tcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaatgttat 13356
Query: 233 tcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggaggcgtttt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13355 tcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggaggcgtttt 13296
Query: 293 cgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgaccaaataat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13295 cgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgaccaaataat 13236
Query: 353 catagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaacggtct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13235 catagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaacggtct 13176
Query: 413 tggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccaggtgaag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13175 tggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccaggtgaag 13116
Query: 473 atctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccgactggag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13115 atctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccgactggag 13056
Query: 533 tagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacnnatacgttat 592
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13055 tagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataacgttat 12996
Query: 593 acanagaagtatccaaatgtttcaataaggacacagaaccccaaccagtacccaaaacga 652
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12995 acaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagtacccaaaacga 12936
Query: 653 caagggtttttccttggnagaaccgntagcgaaagtggcagcttgaaggatttgtagaag 712
|||||| |||||||||| ||||||| |||||||||||||||||||| | ||||| || ||
Sbjct: 12935 caaggg-ttttccttgg-agaaccgttagcgaaagtggcagcttgaggaatttg-aggag 12879
Query: 713 gtggataactttccctgtacaattcattggaaacgttacccgttccagcccaccaagccg 772
|||||| | ||||||||||||||||| |||||||| ||| || |||||| || |||||
Sbjct: 12878 gtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaacaaagcc- 12820
Query: 773 gttagagaaacttttcaaatgggtagaaaccacttcttcttgcttagcgatgggctttac 832
| ||||||||| ||||||| |||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 12819 gctagagaaac-tttcaaagtggtagaaaccac-tcttcttgc-tagcgat-ggctttac 12764
Query: 833 tggg 836
||||
Sbjct: 12763 tggg 12760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7057
Number of Sequences: 1807
Number of extensions: 7057
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)