BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZE06RM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1686                                                        1269   0.0  

>3x_Contig1686 
          Length = 15382

 Score = 1269 bits (640), Expect = 0.0
 Identities = 755/784 (96%), Gaps = 8/784 (1%)
 Strand = Plus / Minus

                                                                         
Query: 53    aagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggtcaacgt 112
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13535 aagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggtcaacgt 13476

                                                                         
Query: 113   aatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaacgaaac 172
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13475 aatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaacgaaac 13416

                                                                         
Query: 173   tcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaatgttat 232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13415 tcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaatgttat 13356

                                                                         
Query: 233   tcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggaggcgtttt 292
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13355 tcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggaggcgtttt 13296

                                                                         
Query: 293   cgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgaccaaataat 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13295 cgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgaccaaataat 13236

                                                                         
Query: 353   catagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaacggtct 412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13235 catagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaacggtct 13176

                                                                         
Query: 413   tggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccaggtgaag 472
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13175 tggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccaggtgaag 13116

                                                                         
Query: 473   atctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccgactggag 532
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13115 atctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccgactggag 13056

                                                                         
Query: 533   tagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacnnatacgttat 592
             |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 13055 tagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataacgttat 12996

                                                                         
Query: 593   acanagaagtatccaaatgtttcaataaggacacagaaccccaaccagtacccaaaacga 652
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12995 acaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagtacccaaaacga 12936

                                                                         
Query: 653   caagggtttttccttggnagaaccgntagcgaaagtggcagcttgaaggatttgtagaag 712
             |||||| |||||||||| ||||||| |||||||||||||||||||| | ||||| || ||
Sbjct: 12935 caaggg-ttttccttgg-agaaccgttagcgaaagtggcagcttgaggaatttg-aggag 12879

                                                                         
Query: 713   gtggataactttccctgtacaattcattggaaacgttacccgttccagcccaccaagccg 772
             |||||| |  ||||||||||||||||| |||||||| ||| || |||||| || ||||| 
Sbjct: 12878 gtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaacaaagcc- 12820

                                                                         
Query: 773   gttagagaaacttttcaaatgggtagaaaccacttcttcttgcttagcgatgggctttac 832
             | ||||||||| |||||||  |||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 12819 gctagagaaac-tttcaaagtggtagaaaccac-tcttcttgc-tagcgat-ggctttac 12764

                 
Query: 833   tggg 836
             ||||
Sbjct: 12763 tggg 12760


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7057
Number of Sequences: 1807
Number of extensions: 7057
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)