BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE07FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1209 0.0
>3x_Contig1794
Length = 36744
Score = 1209 bits (610), Expect = 0.0
Identities = 705/729 (96%), Gaps = 7/729 (0%)
Strand = Plus / Minus
Query: 86 acacaacacaacgacgaatacatttcatgatttagcctaaagacccttttttgttgctcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 acacaacacaacgacgaatacatttcatgatttagcctaaagacccttttttgttgctcc 7607
Query: 146 ggtcattgtcctttctttccatacaatactgtagtgtgaacgtacgaataagactgggaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 ggtcattgtcctttctttccatacaatactgtagtgtgaacgtacgaataagactgggaa 7547
Query: 206 ctattgagaattaacctaaaacgactattactaaaatatacaacgaattaaaacccagcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 ctattgagaattaacctaaaacgactattactaaaatatacaacgaattaaaacccagcg 7487
Query: 266 aattaaaagaaatcagaagaaataaatacgataaaacctaaaaattctaaatgatatgga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7486 aattaaaagaaatcagaagaaataaatacgataaaacctaaaaattctaaatgatatgga 7427
Query: 326 ggttgatacaagtgatgtctcgattccgtttcaaaagggggttctagtctttgttttaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7426 ggttgatacaagtgatgtctcgattccgtttcaaaagggggttctagtctttgttttaat 7367
Query: 386 gaccaacaaacataaatctttcttcaatatactattccttcctttctaacaatatcaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7366 gaccaacaaacataaatctttcttcaatatactattccttcctttctaacaatatcaaag 7307
Query: 446 aaaacactggatcgattataatttgtctatccccgttaaaaatattatcaattaagaacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306 aaaacactggatcgattataatttgtctatccccgttaaaaatattatcaattaagaacc 7247
Query: 506 gaattgaaagacttagattttatattttttagcagaaacgatttgtgtgtaactgatgtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7246 gaattgaaagacttagattttatattttttagcagaaacgatttgtgtgtaactgatgtc 7187
Query: 566 tagttttaagattcatattcatatataccgattaaactgactgcgcatactgagagagat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7186 tagttttaagattcatattcatatataccgattaaactgactgcgcatactgagagagat 7127
Query: 626 gatcttgtttttggcatcaacaagagttgaaagggcagg--tataaatgggtataaggtc 683
|||| || |||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct: 7126 gatc-tggttttggcatcaacaagagttagaaaggcagggtaataaatgggtataaggtc 7068
Query: 684 ctcacttggtaccccggatttttttccacgaaatcgaaatttttccgg-ggggaatcttt 742
|||||||| || |||||||||| | ||||||||||||||||||||||| ||| |||||||
Sbjct: 7067 ctcacttgtta-cccggattttataccacgaaatcgaaatttttccggcgggaaatcttt 7009
Query: 743 tgaaggtcccaaaaaagaacattgttttccccc-aaaattttttggggatttttttcctt 801
|| |||||||| |||| ||||||||||||||| ||||| |||| | ||||||| ||| |
Sbjct: 7008 tg-aggtcccagaaaaagacattgttttcccccaaaaatattttcgcgatttttctccat 6950
Query: 802 aacgcgttt 810
|||||||||
Sbjct: 6949 aacgcgttt 6941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7988
Number of Sequences: 1807
Number of extensions: 7988
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)