BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE07RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 1400 0.0
>3x_Contig1252
Length = 5616
Score = 1400 bits (706), Expect = 0.0
Identities = 783/805 (97%), Gaps = 3/805 (0%)
Strand = Plus / Minus
Query: 49 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4139 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 4080
Query: 109 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 4020
Query: 169 gtactgttttttcaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 gtactgttttttcaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 3960
Query: 229 actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttcagggattgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3959 actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttcagggattgc 3900
Query: 289 ctcaactaatgaactataactgcactttcgaaaacagagagagtggataatttctgattt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3899 ctcaactaatgaactataactgcactttcgaaaacagagagagtggataatttctgattt 3840
Query: 349 catagtactttcgaaaccttcaactgaagtcgaagcacatagagctctagtttctgtcat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3839 catagtactttcgaaaccttcaactgaagtcgaagcacatagagctctagtttctgtcat 3780
Query: 409 taaacgtattaaagtaaggaaacattgttctgtcatggcgattgtcaaactctcttctgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3779 taaacgtattaaagtaaggaaacattgttctgtcatggcgattgtcaaactctcttctgg 3720
Query: 469 gtagtcacctattggaattccttctgcccagtatttgagtccccatcgcgttagaaaatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3719 gtagtcacctattggaattccttctgcccagtatttgagtccccatcgcgttagaaaatt 3660
Query: 529 aaccatgaaatcatgtggatccgcataacacattgaaaactgaacgaggaaaaaatcact 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3659 aaccatgaaatcatgtggatccgcataacacattgaaaactgaacgaggaaaaaatcact 3600
Query: 589 aaagtaagtgaattcacgcatgctgtattntgtatacattttcaaatgatgctgaattgg 648
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 3599 aaagtaagtgaattcacgcatgctgtattttgtatacattttcaattgatgctgaattgg 3540
Query: 649 agagccattgcgtacccaaaaccc-acatcaatctgtgatatcataactaaagtgcagag 707
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3539 agagccattgcgtacccaaaacccaacatcaatctgtgatatcataactaaagtgcagag 3480
Query: 708 ggcctgttctgctatccaaagacattcatttggagatttaaaaaattctttg-aattgga 766
|||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
Sbjct: 3479 ggcctgttctgctatccaaagacattcagttggagatttaaaaaattccttgaaattgaa 3420
Query: 767 gtaatctttggaccgctttggaaggggttcgtatttgccccattgacttcccttgagatt 826
|||||||||| | || |||||||||||||||| |||| |||||||| | || || |
Sbjct: 3419 gtaatctttgagcgtctctggaaggggttcgtatctgccacattgactccactgaagtat 3360
Query: 827 gaatttaatgtgaatacgatttcgg 851
||||||||||| |||||||| ||||
Sbjct: 3359 gaatttaatgt-aatacgatatcgg 3336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6417
Number of Sequences: 1807
Number of extensions: 6417
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)