BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE09RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1130 636 0.0
>3x_Contig1130
Length = 4826
Score = 636 bits (321), Expect = 0.0
Identities = 446/479 (93%), Gaps = 7/479 (1%)
Strand = Plus / Plus
Query: 215 ttaaagtttactgaaatggtctatccatattgtgatgggattggtattaattgtgggtgt 274
|||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 42 ttaaagtttagtgaaatggtgtatggatattgtgatgggattggtattaattgtgggtgt 101
Query: 275 cccattcgtgaacaagttagggaaggtatcggttctgcgttgatttacaatggggaacta 334
||| ||||| |||||||||||||||| |||| || ||||||||| ||||||||| ||
Sbjct: 102 gggattggtgaagaagttagggaaggtatgggttgtgggttgatttagaatggggaagta 161
Query: 335 ttatgtgatatggtaaaagctgtcaaag-ataaatatagggactctgtaagattggagac 393
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 162 ttatgtgatatggtaaaagctgtcaaagcataaatatagggactctgtaagattggagac 221
Query: 394 taagatcagaattcacgacgatgttaaagacactgttaaattgtgcgatgatttatgcga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 taagatcagaattcacgacgatgttaaagacactgttaaattgtgcgatgatttatgcga 281
Query: 454 agctggtgtagattggataacagttcatggcagaacgagaacaacaagatcgtcngtacc 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 282 agctggtgtagattggataacagttcatggcagaacgagaacaacaagatcgtcggtacc 341
Query: 514 tgttaacttagatgcaatcaaa-tcattagagag-acatgaaat-cccngatgttccact 570
||| |||||||||||||||||| ||||||||||| ||||||||| || |||||||||||
Sbjct: 342 tgtaaacttagatgcaatcaaattcattagagagaacatgaaataccaggatgttccact 401
Query: 571 ggtagcaaacggagattg-ttcactcttaatga-tgctatcggatatctgaatacacaaa 628
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 402 ggtagcaaacggagattgtttcactcttaatgattgctatcgtatatctgaatacacaaa 461
Query: 629 agttgaatgcgttttggctttgccaggc-tactatgcaattctgcattatttgacggct 686
|||||| ||||| ||||| ||| |||| ||||||||||| |||||||||| |||||||
Sbjct: 462 agttgatggcgttatggctgtgcgaggcttactatgcaatcctgcattattcgacggct 520
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6487
Number of Sequences: 1807
Number of extensions: 6487
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)