BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE10FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1326 311 1e-84
3x_Contig551 198 2e-50
>3x_Contig1326
Length = 4875
Score = 311 bits (157), Expect = 1e-84
Identities = 171/173 (98%), Gaps = 2/173 (1%)
Strand = Plus / Minus
Query: 94 agatccaaactgctctgctgtttactatcatcgcggtcaaatgcattttgttgttgaaaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agatccaaactgctctgctgtttactatcatcgcggtcaaatgcattttgttgttgaaaa 119
Query: 154 cttcaaagaagctggtgccgatttcgataaggctaaggaattaaatccagaaaacatttt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cttcaaagaagctggtgccgatttcgataaggctaaggaattaaatccagaaaacatttt 59
Query: 214 tgcctacatccaatgtgcttgcttggctttcc-gtgacg-atagatttgatga 264
|||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 58 tgcctacatccaatgtgcttgcttggctttcctgtgacgaatagatttgatga 6
>3x_Contig551
Length = 2723
Score = 198 bits (100), Expect = 2e-50
Identities = 165/179 (92%), Gaps = 6/179 (3%)
Strand = Plus / Minus
Query: 231 cttgcttggctttccgtgacgatagatttgatgattgtgaaactttgttcagcgaagcca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 cttgcttggctttccgtgacgatagatttgatgattgtgaaactttgttcagcgaagcca 2664
Query: 291 gaagaaaagttccaactgcttcagaagtttcaaacttttatggcgaaaattttggctgct 350
||||||| | ||||||||| |||||||| ||||||| |||| || |||||||||||||
Sbjct: 2663 gaagaaagttcccaactgctccagaagttccaaacttntatgccg-aaattttggctgc- 2606
Query: 351 taaaaactcctctagatgctgccattcaagcaatacgatatttgccattcaagttggaa 409
||| |||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||
Sbjct: 2605 taagaact-ctctagatgctgcca-tcaagcaatacgata-ttgcca-tcaagttggaa 2551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9587
Number of Sequences: 1807
Number of extensions: 9587
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 2
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)