BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZE10RM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1489                                                        1342   0.0  

>3x_Contig1489 
          Length = 10722

 Score = 1342 bits (677), Expect = 0.0
 Identities = 814/845 (96%), Gaps = 11/845 (1%)
 Strand = Plus / Minus

                                                                        
Query: 48   ggcggtacctaagctagacgtttctgccaacaggatttacaggagcaagaaaagcaaacg 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 ggcggtacctaagctagacgtttctgccaacaggatttacaggagcaagaaaagcaaacg 2248

                                                                        
Query: 108  ttctagaaagcaaatcaaagcacaagaatatgaaatcgccttatttcttggaagatatag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ttctagaaagcaaatcaaagcacaagaatatgaaatcgccttatttcttggaagatatag 2188

                                                                        
Query: 168  aagactgttgaaatctttgcaaaagcacaaattgagtgaagaacatttagaatactttag 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aagactgttgaaatctttgcaaaagcacaaattgagtgaagaacatttagaatactttag 2128

                                                                        
Query: 228  ggatacaaacgctagctttgaacagtttgaaaccgtcaccacagaagtattagagggtca 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ggatacaaacgctagctttgaacagtttgaaaccgtcaccacagaagtattagagggtca 2068

                                                                        
Query: 288  agtaaactcacgttctctggttgaagtcaaatctgactatgagatgttttctggccctca 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 agtaaactcacgttctctggttgaagtcaaatctgactatgagatgttttctggccctca 2008

                                                                        
Query: 348  agctgccagtaagaacatcatatcgcccataggacaaataattgatctttcaagaaactt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 agctgccagtaagaacatcatatcgcccataggacaaataattgatctttcaagaaactt 1948

                                                                        
Query: 408  tgctagagatgaaaactttgggacgtatttggatctctcagaacaattcaagaagtggtt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 tgctagagatgaaaactttgggacgtatttggatctctcagaacaattcaagaagtggtt 1888

                                                                        
Query: 468  gaatatcatcaagcgtgcggatttaacgatactttcatttttgaagatgttagaatcatt 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gaatatcatcaagcgtgcggatttaacgatactttcatttttgaagatgttagaatcatt 1828

                                                                        
Query: 528  tgaaacatacgactacttactcaacccatcattagatagagacaccaaggaatataacca 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tgaaacatacgactacttactcaacccatcattagatagagacaccaaggaatataacca 1768

                                                                        
Query: 588  attagtcactgagttactgaaatattataaggcctattactccaaagcttatcctctagt 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 attagtcactgagttactgaaatattataaggcctattactccaaagcttatcctctagt 1708

                                                                        
Query: 648  ggacaaggaaa-tctttcc-aaaccattcacaatggatttgat-aatatgtgaagaaccg 704
            ||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||| || | |
Sbjct: 1707 ggacaaggaaattctttccaaaaccatccacaatggatttgataaatatgtgaggaccgg 1648

                                                                        
Query: 705  tatcacagaatccccatcaaagg-aagcggggaaatgtacttcggtggtgtttaatcgat 763
            |||||||||||||||||| |||| ||||||| |||||||| || || |||||||||||||
Sbjct: 1647 tatcacagaatccccatcgaaggaaagcgggaaaatgtac-tccgttgtgtttaatcgat 1589

                                                                        
Query: 764  ggttggatagtccagtc-gaatttaatact-atggtccaaaggaacagtttaatattgga 821
            |||| |||||| ||||| |||||||||||| ||| || ||  |||||||||||||||| |
Sbjct: 1588 ggtttgatagt-cagtcggaatttaatactcatgttcaaactgaacagtttaatattgca 1530

                                                                        
Query: 822  ttgtctcgaaattaaaagactttgatgaagaaat-cacgtttcactggtttttccaaatt 880
            |||||||| |||  ||||  |||||||||| ||| |||| |||||| |||||||||||||
Sbjct: 1529 ttgtctcggaatagaaagcgtttgatgaaggaatacacg-ttcact-gtttttccaaatt 1472

                 
Query: 881  tctct 885
            |||||
Sbjct: 1471 tctct 1467


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7722
Number of Sequences: 1807
Number of extensions: 7722
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)