BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE11FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1409 450 e-126
>3x_Contig1409
Length = 9404
Score = 450 bits (227), Expect = e-126
Identities = 276/287 (96%), Gaps = 4/287 (1%)
Strand = Plus / Plus
Query: 89 tcaagttccgttcgaagagaaggcggcaggttttctggcacgctgaaatccaacgacgta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8484 tcaagttccgttcgaagagaaggcggcaggttttctggcacgctgaaatccaacgacgta 8543
Query: 149 gataattcggacatattgtttaggattcaggtgcttcaccgattgaagtacccttgaata 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8544 gataattcggacatattgtttaggattcaggtgcttcaccgattgaagtacccttgaata 8603
Query: 209 cactttttatcgcagaggaacaccaggtttatgtatgtcgcacggaatgaaactccatat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8604 cactttttatcgcagaggaacaccaggtttatgtatgtcgcacggaatgaaactccatat 8663
Query: 269 tcctaatgtttgatgttatcccagttattatttttttgtgg-aattatgattcaaattaa 327
|||||||||||||||||||||||||||||| | | |||||| ||| ||||| ||||||||
Sbjct: 8664 tcctaatgtttgatgttatcccagttatta-tatattgtggaaataatgatacaaattaa 8722
Query: 328 aggtttggaaccttttttttggggggttggtttttcttgggacaact 374
|||| ||||||| ||||||| ||||||| ||||||| ||||||||||
Sbjct: 8723 aggtctggaacc-tttttttcgggggtttgtttttc-tgggacaact 8767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,371
Number of Sequences: 1807
Number of extensions: 22371
Number of successful extensions: 160
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)