BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZE11RM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1435                                                        1235   0.0  

>3x_Contig1435 
          Length = 8899

 Score = 1235 bits (623), Expect = 0.0
 Identities = 665/675 (98%), Gaps = 3/675 (0%)
 Strand = Plus / Plus

                                                                        
Query: 41   gcttgggcaacttgcaattccaattcagttggagcttgggacaaaatcttggcttgtggg 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6122 gcttgggcaacttgcaattccaattcagttggagcttgggacaaaatcttggcttgtggg 6181

                                                                        
Query: 101  tcagacatcgtggcttatgtttccttgcttggttatatcaagaactcctctaatggaaaa 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6182 tcagacatcgtggcttatgtttccttgcttggttatatcaagaactcctctaatggaaaa 6241

                                                                        
Query: 161  aaatcgctaaaacagtgctgcaactaatattcaactaacgctaatttattgtatataact 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6242 aaatcgctaaaacagtgctgcaactaatattcaactaacgctaatttattgtatataact 6301

                                                                        
Query: 221  attagacctcatttcaattgtttaaacagtaaaccttcaattctgaaaaagttgctgaga 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6302 attagacctcatttcaattgtttaaacagtaaaccttcaattctgaaaaagttgctgaga 6361

                                                                        
Query: 281  ctgggatgcattacgatgaatgaaacctactactggcctggtctggatagctcgtagaat 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362 ctgggatgcattacgatgaatgaaacctactactggcctggtctggatagctcgtagaat 6421

                                                                        
Query: 341  ttgccggtccatacttccacacagtaggtagagagagtagcgagcctagacagtcgacac 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6422 ttgccggtccatacttccacacagtaggtagagagagtagcgagcctagacagtcgacac 6481

                                                                        
Query: 401  ggcctagctgggttccttcctacacccggaacaggaccaaacggtaggtggaaaggtcca 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6482 ggcctagctgggttccttcctacacccggaacaggaccaaacggtaggtggaaaggtcca 6541

                                                                        
Query: 461  ttggaggccctgcctaacctgttagggtctctcagacctgactggtgatcgaaagacatg 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6542 ttggaggccctgcctaacctgttagggtctctcagacctgactggtgatcgaaagacatg 6601

                                                                        
Query: 521  ccgtggctacgatggaaggacacttcgttacgaatgtgggaagcggtggctattctcaaa 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6602 ccgtggctacgatggaaggacacttcgttacgaatgtgggaagcggtggctattctcaaa 6661

                                                                        
Query: 581  a-gaaaaatacaacgccataatacctaaaaaagggaaggtgaatatatctagaaaaatga 639
            | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 6662 atgaaaaatacaacgccataatacct-aaaaagggagggtgaatatatctagaaaaatga 6720

                                                                        
Query: 640  aagactttcgttgtgtacagatgccaagaccgtaaaaatatgattggatgtaacagttcc 699
            ||||||||||| |||||||||||| ||||| |||||||||||  |||||||||||| |||
Sbjct: 6721 aagactttcgtggtgtacagatgcaaagacggtaaaaatatgtatggatgtaacag-tcc 6779

                           
Query: 700  caagttattacttct 714
            || ||||||||||||
Sbjct: 6780 caggttattacttct 6794


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,792
Number of Sequences: 1807
Number of extensions: 12792
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)