BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZE12FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 716 0.0
>3x_Contig1059
Length = 3822
Score = 716 bits (361), Expect = 0.0
Identities = 429/448 (95%), Gaps = 3/448 (0%)
Strand = Plus / Plus
Query: 86 accgtttctggtttcaccttgctcatgtttgaaactttccttcaataatgccaagtcttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 accgtttctggtttcaccttgctcatgtttgaaactttccttcaataatgccaagtcttc 1271
Query: 146 ttgaatagtctttaagttaatagcattttctggagtgtaaacagagacagcaccggtaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 ttgaatagtctttaagttaatagcattttctggagtgtaaacagagacagcaccggtaac 1331
Query: 206 tagcccagtgatttatgcaacgtaaccggagtgtccaccttgaacctcaacaacgaacac 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 tagcccagtgaaagatgcaacgtaaccggagtgtccaccttgaacctcaacaacgaacac 1391
Query: 266 tctacgtctggtagatgatgcagattgtttgatagcatcggtgtacttcactaacgcatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 tctacgtctggtagatgatgcagattgtttgatagcatcggtgtacttcactaacgcatt 1451
Query: 326 caaacaggtatcggaacccaaagagtattctgtaccaggcacgttgttggacacggtggc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 caaacaggtatcggaacccaaagagtattctgtaccaggcacgttgttggacacggtggc 1511
Query: 386 ttggatcaaacacatttggatgtttgaagattggatattggtcacgaccattctcttaat 445
| |||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 1512 tgggatcaaacacattggaatg-ttgaagattggatattggtcacgacca-tctcttaat 1569
Query: 446 gctttcaaagactttgaacctttcaatccaccaaggatgatgacaccattaaaacttgtt 505
||||||||||| |||||| |||||||||||||||||||||||| | |||||||||
Sbjct: 1570 tgcttcaaagacttgaaaccttcaaatccaccaaggatgatgacacca-tcaaacttgtt 1628
Query: 506 ctttnggaaatggtatccgatagtaccc 533
|||| ||||||||||| |||||||||||
Sbjct: 1629 cttttggaaatggtatgcgatagtaccc 1656
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8634
Number of Sequences: 1807
Number of extensions: 8634
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)