BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZE12RM1.SCF screened BAC_end (1125 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1763 698 0.0 >3x_Contig1763 Length = 22654 Score = 698 bits (352), Expect = 0.0 Identities = 358/360 (99%) Strand = Plus / Minus Query: 48 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10975 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 10916 Query: 108 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10915 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 10856 Query: 168 cgtctcttttcggtattatgctatttccttttatttctccgtttggattggttttttttt 227 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 10855 cgtctcttttcggtattatgctatttccttttatttctccgttttgattggttttttttt 10796 Query: 228 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10795 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 10736 Query: 288 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10735 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 10676 Query: 348 gacatatatatatttatatatgttctaagtatattgatagacttattcaatttttttggg 407 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 10675 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 10616 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,503 Number of Sequences: 1807 Number of extensions: 17503 Number of successful extensions: 240 Number of sequences better than 1.0e-20: 1 length of query: 1125 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1109 effective length of database: 10,329,639 effective search space: 11455569651 effective search space used: 11455569651 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)