BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF01FM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 684 0.0
>3x_Contig1652
Length = 14842
Score = 684 bits (345), Expect = 0.0
Identities = 562/609 (92%), Gaps = 20/609 (3%)
Strand = Plus / Plus
Query: 89 ctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctcca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12567 ctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctcca 12626
Query: 149 aaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaaga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12627 aaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaaga 12686
Query: 209 aaaggaaataaactatgtattttaacctatttacattgcataatttgaatgatagagtat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12687 aaaggaaataaactatgtattttaacctatttacattgcataatttgaatgatagagtat 12746
Query: 269 aaagtaattgttaagaaccaaaatgaactactgtatttagttaagaagtcgcattttgga 328
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct: 12747 aaagtaattgttaagaaccaaaatgaactactgta-ttagttaag-agtcgca-tttgga 12803
Query: 329 gttgatttctgagcttnagaaatttctatgttaaatgcaattcttaagagaccatgagna 388
||||| ||||||||| || | |||||||||| |||||||||| |||||||||||||| |
Sbjct: 12804 gttga-ttctgagctggag-attttctatgtt-aatgcaattc-taagagaccatgag-a 12858
Query: 389 tcctgaaacatagctaagtattttatgcatatttgaattatagttattcttcttcatgct 448
| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 12859 ttctgaaacatagctaagtattttatgcatatatg-attatagttattcttctccatgct 12917
Query: 449 tatntagtgatatttgcagttattatatatcgntagtagcgcttgctt-actactt-aat 506
||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct: 12918 tattaggtgatatttgcagttattatatatcgttagtagcgcttgcttaactacttaaat 12977
Query: 507 atattcagat-gncccttgaaagctttaga-ttaccagacttcatgacaacggaacacat 564
|||||||||| | | |||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 12978 atattcagatagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacat 13037
Query: 565 gaaccactcgatagggtctttgaccctcaatttttggtaatatccagttgggtttaatca 624
|||| |||||||| ||||||||||| |||| ||||||| ||||||||||| | || ||||
Sbjct: 13038 gaacaactcgata-ggtctttgaccttcaa-ttttggt-atatccagttgtg-ttcatca 13093
Query: 625 aacccaatgccagctcttaattcaattttaagaaccggcactttggaaagtaattctttt 684
||||||||| ||||||| ||||| | ||| |||| |||||| ||||| ||| | |||| |
Sbjct: 13094 aacccaatg-cagctctcaattc-agtttcagaaacggcac-ttggagagtcaatcttgt 13150
Query: 685 tacccaaga 693
|||||||||
Sbjct: 13151 tacccaaga 13159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8521
Number of Sequences: 1807
Number of extensions: 8521
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)