BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF01RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1127 1590 0.0
>3x_Contig1127
Length = 4949
Score = 1590 bits (802), Expect = 0.0
Identities = 846/856 (98%), Gaps = 4/856 (0%)
Strand = Plus / Plus
Query: 48 tacccatttcaaaccgtcgacatcgattaaatttattccatgggagacaaatagtgtctt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tacccatttcaaaccgtcgacatcgattaaatttattccatgggagacaaatagtgtctt 466
Query: 108 gagaaacatttgagcgtttttgggtggtgatacataacatttctttaaatctgtggatgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gagaaacatttgagcgtttttgggtggtgatacataacatttctttaaatctgtggatgg 526
Query: 168 taaatacactctgatcccagatggagccaaatacacagccacttcatgtttgaggctctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 taaatacactctgatcccagatggagccaaatacacagccacttcatgtttgaggctctc 586
Query: 228 tgcattcaacttcgataaacccaaatccttggaacaaattgcaacagtcaaatctccatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgcattcaacttcgataaacccaaatccttggaacaaattgcaacagtcaaatctccatt 646
Query: 288 ttcaaatagatgtggatcaaagtgtaagattttggtcgaaaaggtatatgattcctgaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttcaaatagatgtggatcaaagtgtaagattttggtcgaaaaggtatatgattcctgaaa 706
Query: 348 tatgcatgagtttccaaagggcacgatggtttcattggaggatagggtcaaattgacata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tatgcatgagtttccaaagggcacgatggtttcattggaggatagggtcaaattgacata 766
Query: 408 tatcatacgcctgagagccttcataaagatggcatatggggtaggcaagtgaggttttga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tatcatacgcctgagagccttcataaagatggcatatggggtaggcaagtgaggttttga 826
Query: 468 gaattctggggtgaagtgacccttccgctctggctggggtgactccgattcgttattcag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattctggggtgaagtgacccttccgctctggctggggtgactccgattcgttattcag 886
Query: 528 ctcaaggtttaactctggtaatggatcatcgttaatactaaaacaccataactccctgga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ctcaaggtttaactctggtaatggatcatcgttaatactaaaacaccataactccctgga 946
Query: 588 aaaaagagctgcaagtactttggggtttttcctccttaggaacaactctgcttgaattga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 aaaaagagctgcaagtactttggggtttttcctccttaggaacaactctgcttgaattga 1006
Query: 648 ccattgattatctgccttgctaggtacatattggtgatagtttatttgtttgacagtttc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 ccattgattatctgccttgctaggtacatattggtgatagtttatttgtttgacagtttc 1066
Query: 708 taacctgtataaattggtaacgatgtcctccaatcgacatgcgtncccaaccttcttttt 767
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1067 taacctgtataaattggtaacgatgtcctccaatcgacatgcgtccccaacctccttttt 1126
Query: 768 catggtttccgttgctctgatgaaaa-taagcttnatagtcagactgattaggatgcaac 826
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 1127 catggtttccgttgctctgatgaaaagtaagctggatagtcagactgattaggatgcaac 1186
Query: 827 ggtactttcaaaaatccttactttgttaagagatgctgtctagttaccttctttttaaat 886
||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 1187 ggtac-ttcaaaaatccgtac-ttgttaagagatgctgtctagttaccttcttttaaaat 1244
Query: 887 tattacgattttatct 902
|| |||||||||||||
Sbjct: 1245 ta-tacgattttatct 1259
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6532
Number of Sequences: 1807
Number of extensions: 6532
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)