BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF02FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1175 149 1e-35
>3x_Contig1175
Length = 4107
Score = 149 bits (75), Expect = 1e-35
Identities = 121/134 (90%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 643 aaaaaaacaaaaaatgagtgtgaagtaagaaatttattggaaagctgtcaggtatgggac 702
||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 9 aaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcaggtatgggac 68
Query: 703 gttttccacaatgcaaagaaggctgnctaaattttaaagggt-cttatcaaaagata-aa 760
|||||| ||| |||||||||||||| ||||| | ||||| || |||||||||||||| |
Sbjct: 69 gttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaaaagatagac 128
Query: 761 tttttttgggcggt 774
||||||||||||||
Sbjct: 129 tttttttgggcggt 142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,800
Number of Sequences: 1807
Number of extensions: 10800
Number of successful extensions: 218
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)