BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF02RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1629 0.0
>3x_Contig1728
Length = 20685
Score = 1629 bits (822), Expect = 0.0
Identities = 874/888 (98%), Gaps = 3/888 (0%)
Strand = Plus / Minus
Query: 49 tgtcccaagctaaagcaaagcaataaatttatgcatgattttctaagttcccatttgagc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14532 tgtcccaagctaaagcaaagcaataaatttatgcatgattttctaagttcccatttgagc 14473
Query: 109 tcattcatcctttcgcatataacaatgctatttgatgttgaatgtcaacaactgattaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14472 tcattcatcctttcgcatataacaatgctatttgatgttgaatgtcaacaactgattaga 14413
Query: 169 atatctgggtttattcaagttaactcgctcgatgacggattgatcttagatggaacaaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14412 atatctgggtttattcaagttaactcgctcgatgacggattgatcttagatggaacaaaa 14353
Query: 229 ctgctagacattcttgaagtgttggttcaagggtccgcttcaggatcatataacgacctc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14352 ctgctagacattcttgaagtgttggttcaagggtccgcttcaggatcatataacgacctc 14293
Query: 289 atcgccaacagtgtcaacattggaaagctactctttttactttcgttatcgaaggatgag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14292 atcgccaacagtgtcaacattggaaagctactctttttactttcgttatcgaaggatgag 14233
Query: 349 aaactttcaaatgcggcgacttctttgttcaaatggtggatcccatcgttcgctacagcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14232 aaactttcaaatgcggcgacttctttgttcaaatggtggatcccatcgttcgctacagcc 14173
Query: 409 tgcaaagaggatgagaaactagatataaccgtatggtctcttttacgtaacttgcttacc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14172 tgcaaagaggatgagaaactagatataaccgtatggtctcttttacgtaacttgcttacc 14113
Query: 469 gaaagcgcaccaatcacagttgcaaaaaatggctatatcttttgtttaaggatgttaatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14112 gaaagcgcaccaatcacagttgcaaaaaatggctatatcttttgtttaaggatgttaatg 14053
Query: 529 gaggatggattctcaacaacaagtcaaagtttcgcccaatcaaaagattactggaattta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14052 gaggatggattctcaacaacaagtcaaagtttcgcccaatcaaaagattactggaattta 13993
Query: 589 atacaatccggactaaaccaggaggttcatgaaatcaagaaaattgtgctctctatcatg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13992 atacaatccggactaaaccaggaggttcatgaaatcaagaaaattgtgctctctatcatg 13933
Query: 649 aagttgagtctccaattacttgctcaaaataacttacccatcctaaccgatattatccaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13932 aagttgagtctccaattacttgctcaaaataacttacccatcctaaccgatattatccaa 13873
Query: 709 ttcagtggaagtaggtctgagattgaatcatggaaaaagtttaccaccttatatgagaat 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13872 ttcagtggaagtaggtctgagattgaatcatggaaaaagtttaccaccttatatgagatt 13813
Query: 769 gtcgggattgataccgctttgaatcagtgtgaggcggctgcgccagatatccttgatatt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13812 gtcgggattgataccgctttgaatcagtgtgaggcggctgcgccagatatccttgatatt 13753
Query: 829 nttggagattcaaatg-tcatgctaggttgggttttatcattctatccaaccggttt-ag 886
|||||||| |||||| ||||||||| | |||||| |||||||||||| |||||||| ||
Sbjct: 13752 tttggagatccaaatgttcatgctagttggggtttaatcattctatcc-accggtttaag 13694
Query: 887 aaccactatggaatcggtcanaaaattaccgcttagactgatgctaca 934
| | |||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 13693 agcaactatggaatcggtcagaaaattcacgcttagactgatgctaca 13646
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6408
Number of Sequences: 1807
Number of extensions: 6408
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)