BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZF03RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1412                                                        1411   0.0  

>3x_Contig1412 
          Length = 7639

 Score = 1411 bits (712), Expect = 0.0
 Identities = 801/824 (97%), Gaps = 6/824 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   cgaaatcatccctttagttccttaacaaggttgacataacgattgtattcttcttcattc 107
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4519 cgaaatcatcc-tttagttccttaacaaggttgacataacgattgtattcttcttcattc 4461

                                                                        
Query: 108  atgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4460 atgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaa 4401

                                                                        
Query: 168  tgtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4400 tgtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttt 4341

                                                                        
Query: 228  aaattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4340 aaattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgc 4281

                                                                        
Query: 288  gaggttaaacccaatctccacatatcacttagaataataataagaacccttgatggatac 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4280 gaggttaaacccaatctccacatatcacttagaataataataagaacccttgatggatac 4221

                                                                        
Query: 348  aaaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4220 aaaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttc 4161

                                                                        
Query: 408  aagagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagc 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4160 aagagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagc 4101

                                                                        
Query: 468  tcatcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4100 tcatcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatg 4041

                                                                        
Query: 528  gaaacaacattcaattgttttggagaagagccatcattcaaagtactatttgccgagaag 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4040 gaaacaacattcaattgttttggagaagagccatcattcaaagtactatttgccgagaag 3981

                                                                        
Query: 588  cgcctgttttttaccggagtagcgttgatgcctcctcctacatatacaccagagcgcata 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3980 cgcctgttttttaccggagtagcgttgatgcctcctcctacatatacaccagagcgcata 3921

                                                                        
Query: 648  gaggactgtaaacgtgcaacttcctccttt-aagaaaaaacttctttntntaaatcggcg 706
            |||||||||||||||||||||||||||||| |||||||||||||||| | || |||||||
Sbjct: 3920 gaggactgtaaacgtgcaacttcctcctttaaagaaaaaacttctttttttagatcggcg 3861

                                                                        
Query: 707  ttttctgattgagatgttagaagctcatctcttgcggattttaattctttcaaatgggat 766
            |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||  ||||
Sbjct: 3860 ttttctgattgagatgttagaagctcatctctcgcggatgttaattcttccaaagtggat 3801

                                                                        
Query: 767  gcaatttcatcttttcagttctttctgcttgtttgaaaatttcgtcaacttttgcctttt 826
            ||||||||||||||  ||||| ||||||||| |||| || ||||||||||| |||| |||
Sbjct: 3800 gcaatttcatctttcaagttc-ttctgcttg-ttgagaagttcgtcaacttctgcc-ttt 3744

                                                        
Query: 827  gcananatgaattcttcttttgcagcaaatcaatgggtcgttaa 870
            ||| | |||| ||||||||||||||| ||||||| |||||||||
Sbjct: 3743 gcagagatgatttcttcttttgcagc-aatcaattggtcgttaa 3701


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7645
Number of Sequences: 1807
Number of extensions: 7645
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)