BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF04FM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 565 e-161
>3x_Contig1184
Length = 5183
Score = 565 bits (285), Expect = e-161
Identities = 373/397 (93%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 84 atgcctcaatggaaccaagtgttgatatcaacgatattgagcatgttccaggcactggta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 atgcctcaatggaaccaagtgttgatatcaacgatattgagcatgttccaggcactggta 3755
Query: 144 tgtttttcacagccaatgaaggtattccaatgcatacgtattatattccaaatctagggc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 tgtttttcacagccaatgaaggtattccaatgcatacgtattatattccaaatctagggc 3815
Query: 204 cagcgccaaggtggtgttcgttcttggattcgatcacagaagaattggaagagaaaccaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3816 cagcgccaaggtggtgttcgttcttggattcgatcacagaagaattggaagagaaaccaa 3875
Query: 264 gcgattctgtttactcgaactacagattcatcacgaaagcagatgtgaagaaaattgaat 323
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 3876 gcgattctgtttactcgaactacagattcatcacgaaggcagatgtgaag-aaattgaat 3934
Query: 324 ttgactcacttgattggcttcaaggtttttgagagcatacatgcacggtttctttatcaa 383
||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct: 3935 ttgactcacttgattggctccaagg-ttttgagagcatacatgcacggtttcttcatcaa 3993
Query: 384 tac-caattgtattaataaggaaccattgattggttatccaaacttttacccggatggaa 442
||| | ||||| | |||||| | ||||||||| | ||||||||| ||||| |||| ||
Sbjct: 3994 tacagagttgta-tgataaggtagcattgattgctaatccaaactcttaccgtgatgaaa 4052
Query: 443 aaaaaaaaaaaatttgacctcggattgaaaaggaaag 479
| ||| | ||||| ||| ||||||||||||||||||
Sbjct: 4053 gagaaagagaaattagacgtcggattgaaaaggaaag 4089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,820
Number of Sequences: 1807
Number of extensions: 18820
Number of successful extensions: 400
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)