BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF04RM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1412 1249 0.0
>3x_Contig1412
Length = 7639
Score = 1249 bits (630), Expect = 0.0
Identities = 702/720 (97%), Gaps = 5/720 (0%)
Strand = Plus / Minus
Query: 48 cgaaatcatcctttagttccttaaca-ggttgacataacgattgtattcttcttcattca 106
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4519 cgaaatcatcctttagttccttaacaaggttgacataacgattgtattcttcttcattca 4460
Query: 107 tgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4459 tgccactattgtacgtttcatcggtagttatcgactcatatgcatatactacaaaagaat 4400
Query: 167 gtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gtagttctctgacgttagtataccagaaagcaccatgttcaatcataacatcgggcttta 4340
Query: 227 aattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgcg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 aattagagattatcttttgtatggcatctaaaacttcagctaagaaagtttcactttgcg 4280
Query: 287 aggttaaacccaatctccacatatcacttagaataataataagaacccttgatggataca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4279 aggttaaacccaatctccacatatcacttagaataataataagaacccttgatggataca 4220
Query: 347 aaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 aaacttcttttcttgtcaagttcacagagacaccagttggaggaactttgccacccttca 4160
Query: 407 agagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 agagtccctcgatgatttcagtattgagggatctcgaatcttcgaacattttgtatagct 4100
Query: 467 catcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatgg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4099 catcattaatttgagacattaacgctgaaacatcttcagtattgaagttattgtttatgg 4040
Query: 527 aaacaacattcaattgntttggagaagagccatcattcanagtactatttgccgagaagc 586
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4039 aaacaacattcaattgttttggagaagagccatcattcaaagtactatttgccgagaagc 3980
Query: 587 gcctgttttttaccggagtagcgttgatgcctccttctacatatacaccagagcgcatag 646
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3979 gcctgttttttaccggagtagcgttgatgcctcctcctacatatacaccagagcgcatag 3920
Query: 647 aggactgtaaacgtgcaactttcttctttaaagaaaaaac-tctttttttaaatccgcgg 705
||||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||
Sbjct: 3919 aggactgtaaacgtgcaacttcctcctttaaagaaaaaacttctttttttagatcggcgt 3860
Query: 706 tttctgattgagtatgtta-aagctcattttttccggatgttaattttttccaaagtgga 764
|||||||||||| |||||| |||||||| | | |||||||||| || ||||||||||||
Sbjct: 3859 tttctgattgag-atgttagaagctcatctctcgcggatgttaa-ttcttccaaagtgga 3802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9027
Number of Sequences: 1807
Number of extensions: 9027
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)