BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF05FM1.SCF screened BAC_end
(1041 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig989 603 e-172
>3x_Contig989
Length = 4314
Score = 603 bits (304), Expect = e-172
Identities = 393/411 (95%), Gaps = 9/411 (2%)
Strand = Plus / Minus
Query: 88 ccagatacgtttgttgggaacgaacttgctctttttaccagatatatctcttgtttgaca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 ccagatacgtttgttgggaacgaacttgctctttttaccagatatatctcttgtttgaca 1744
Query: 148 ccttttgttatttcaagtagaaatgattcaagatcgtttctatcacagtgacaaatttca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 ccttttgttatttcaagtagaaatgattcaagatcgtttctatcacagtgacaaatttca 1684
Query: 208 aacggatattgatcagggaaatctgcctcgaattgtgtcttaacacggcttataagataa 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 aacggatattgaacagggaaatctgcctcgaattgtgtcttaacacggcttataagataa 1624
Query: 268 atagtaagcagcagtatctgatatggaaagtcaagtaccaattgagcaagcgatgcatat 327
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1623 atagtaagcagcagtatctgatatggaaagtcaggtaccaattgagcaagcgatgcatat 1564
Query: 328 actgttctctattttgttcagatcttgcaacgatttcctcatctttcaccatagntaaag 387
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct: 1563 actgttctctattttgttcagatctggcaacgatttcctcatctttcaccatagtt-aag 1505
Query: 388 ct-gaaaaatttttttattttgaaatcgtaaatcgatctaaagctacttttgaattatgt 446
|| ||||||||||||||||| || |||| ||||||||||||||||| ||||||| |||
Sbjct: 1504 ctggaaaaatttttttatttgaaattcgt-aatcgatctaaagctac-tttgaataatg- 1448
Query: 447 ttgaaccatgtactattttgaggtcttcacccaagtttaaaagggtgtatt 497
|||||||||| |||| |||||||||| || |||||||| ||||||||||||
Sbjct: 1447 ttgaaccatg-acta-tttgaggtctcca-ccaagttt-aaagggtgtatt 1401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,936
Number of Sequences: 1807
Number of extensions: 15936
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 1041
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1025
effective length of database: 10,329,639
effective search space: 10587879975
effective search space used: 10587879975
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)