BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF05RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1455 1394 0.0
>3x_Contig1455
Length = 9095
Score = 1394 bits (703), Expect = 0.0
Identities = 832/863 (96%), Gaps = 9/863 (1%)
Strand = Plus / Plus
Query: 47 attcagcattttatccaattaaaaactggtaaaaaggctaccgcagctcgtcctattgat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 attcagcattttatccaattaaaaactggtaaaaaggctaccgcagctcgtcctattgat 3712
Query: 107 tcaagcaggtataaactaggtatggaccagagatagagcgctaatagggtatttttcctg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 tcaagcaggtataaactaggtatggaccagagatagagcgctaatagggtatttttcctg 3772
Query: 167 cttcatcgatggatcatgtatcagtttcttacgtgtttctcggtgattttggtttgttga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 cttcatcgatggatcatgtatcagtttcttacgtgtttctcggtgattttggtttgttga 3832
Query: 227 cattttggaaatgcgtgtattatccgggtaacagttgctattatttgccaagcactgatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3833 cattttggaaatgcgtgtattatccgggtaacagttgctattatttgccaagcactgatg 3892
Query: 287 ccgtgcttacaagggcccatcagcattgtttactgacccccatctgagatctattccacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3893 ccgtgcttacaagggcccatcagcattgtttactgacccccatctgagatctattccacc 3952
Query: 347 aagtgatggtacggaacccaaatgctttttattggtgctaatagggtcaaagctcctcgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3953 aagtgatggtacggaacccaaatgctttttattggtgctaatagggtcaaagctcctcgt 4012
Query: 407 aaaacatcagatcacgtgactagctcgtttcgcccatacgaaaaagaaaaaaaatcaaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4013 aaaacatcagatcacgtgactagctcgtttcgcccatacgaaaaagaaaaaaaatcaaca 4072
Query: 467 aaactcatctcacttaagaaacgaaacttagagaacaacaaacaacaaacagtaaacgag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4073 aaactcatctcacttaagaaacgaaacttagagaacaacaaacaacaaacagtaaacgag 4132
Query: 527 gggggcgagacaaataccaaaaacagtcgttatcagcgcatcagaaccagtccagtagtc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4133 gggggcgagacaaataccaaaaacagtcgttatcagcgcatcagaaccagtccagtagtc 4192
Query: 587 attgattatagttattgtacgggttttgcgttctatttcttttctatttcattgattcta 646
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4193 attgattatagttattgtacggg-tttgcgttctatttcttttctatttcattgattcta 4251
Query: 647 aatagtgaattacagagtaagttcagtctcaaaccttctcatcggttttgtttggattta 706
| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 4252 ataagtgaattacagagtaagttcagtctcaaaccttctcatcgg-tttgttt-gattta 4309
Query: 707 ttagaatgctggtaagtcatagaaaatagcgaggtatttctttgttcatttgaacatcgc 766
||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 4310 ttagattgct-gtaagtcatagaaaatagcgagttatttctttg-tcatttgaacatcgc 4367
Query: 767 acatttacgcacacagtatcaagcatagctttactgttaggaatcttcgag-ttgccttc 825
|||| |||||||||||||||||||||||||||||||| || |||| ||||| |||| |
Sbjct: 4368 acatctacgcacacagtatcaagcatagctttactgtaagaaatc-tcgagtttgcatcg 4426
Query: 826 aaaggtaaggctacaaatttattccttatcgaaa-gttggaatggattcaggttggt-tt 883
|||| |||| |||||||||||||| |||||||| |||| | |||||||| | |||| ||
Sbjct: 4427 aaagttaagcctacaaatttattcactatcgaaatgttgaagtggattcaaggtggtatt 4486
Query: 884 aatgccctcccaggaattgctga 906
| |||| || |||| ||||||||
Sbjct: 4487 agtgccgtcacagggattgctga 4509
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7689
Number of Sequences: 1807
Number of extensions: 7689
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)