BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF07FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 698 0.0
>3x_Contig1735
Length = 19486
Score = 698 bits (352), Expect = 0.0
Identities = 401/411 (97%), Gaps = 5/411 (1%)
Strand = Plus / Plus
Query: 86 atcaaacctccttttcaatgtcctagtttgcctgtaatttaatccagatcgcctattaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15455 atcaaacctccttttcaatgtcctagtttgcctgtaatttaatccagatcgcctattaaa 15514
Query: 146 ctccttgagcaaagtgttccatgatttcatcctatggctatgtgtttgaagatgtggctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15515 ctccttgagcaaagtgttccatgatttcatcctatggctatgtgtttgaagatgtggctt 15574
Query: 206 gtattctcccaaaagagacaccaagagttcatccaaattagaatgcgaatatatgtgtga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15575 gtattctcccaaaagagacaccaagagttcatccaaattagaatgcgaatatatgtgtga 15634
Query: 266 catgtaggttagatttcgatattaaaaagtagcagaaaagggaagtatcaaagtgtgata 325
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 15635 catgtaggttagatttcgatattaaaaagtagcagaaaagggaagtatcaaggtgtgata 15694
Query: 326 actt-acaccgcaattcagtgtgacaatatactgtttcaagtcacacctaactcatattt 384
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15695 acttcacaccgcaattcagtgtgacaatatactgtttcaagtcacacctaactcatattt 15754
Query: 385 ctcatcctctcatttncttcttgcatgtaatcttatctgaacccgtataccctgaattag 444
|||||||||||| || |||||||||||| |||||||||||||| |||||| ||| |||||
Sbjct: 15755 ctcatcctctcaatttcttcttgcatgt-atcttatctgaaccggtatacgctg-attag 15812
Query: 445 -atttacctttttctttaaaagttatgaaaaggtgatattggaacaaagtt 494
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 15813 aatttacctttttctttaaaagttatgaaaa-gtgatattggaacaaagtt 15862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9459
Number of Sequences: 1807
Number of extensions: 9459
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)