BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF08RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1670 1201 0.0
>3x_Contig1670
Length = 9382
Score = 1201 bits (606), Expect = 0.0
Identities = 702/726 (96%), Gaps = 8/726 (1%)
Strand = Plus / Minus
Query: 44 cttccactaattaaaggtcagttccaaaaggtatgtaaacagagggttcttcatttaatt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4471 cttccactaattaaaggtcagttccaaaaggtatgtaaacagagggttcttcatttaatt 4412
Query: 104 ttcccatttggtttgatgattaagtcattattactctacgttaatgaatatgtcaggcag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4411 ttcccatttggtttgatgattaagtcattattactctacgttaatgaatatgtcaggcag 4352
Query: 164 aagaaacggagaacatctcaagtgatacactgaaaagatcaaatcccacttccactttaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4351 aagaaacggagaacatctcaagtgatacactgaaaagatcaaatcccacttccactttaa 4292
Query: 224 gcgtcatcaaatacaacataaagtcaaatgtccagtatgagtattaatcctagtaatcct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4291 gcgtcatcaaatacaacataaagtcaaatgtccagtatgagtattaatcctagtaatcct 4232
Query: 284 ctcgaacaagttcctagtgccaatactactcgttatccagttctacgcgactgcaacgat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4231 ctcgaacaagttcctagtgccaatactactcgttatccagttctacgcgactgcaacgat 4172
Query: 344 atgtagaagtttttatgtgtgaaactttaggatagcgttttgcagccagatatgtgaagc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4171 atgtagaagtttttatgtgtgaaactttaggatagcgttttgcagccagatatgtgaagc 4112
Query: 404 cacactgagacattcggaaccttcactactgaaaaatttttgcataatttgatgtgaata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4111 cacactgagacattcggaaccttcactactgaaaaatttttgcataatttgatgtgaata 4052
Query: 464 ataatcattgcatacacttaaagtataatttaaaccttaaatctcgggtgcactgccgtt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4051 ataatcattgcatacacttaaagtataatttaaaccttaaatctcgggtgcactgccgtt 3992
Query: 524 accgtagcggtgataacgttcttgtgcanntataatcatgaatatcacgtgatacattgn 583
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3991 accgtagcggtgataacgttcttgtgcaatataaatcatgaatatcacgtgatacattgt 3932
Query: 584 taacaatgtctctcaggaagacaaacacactgcatat-atatctttacagatcta--cac 640
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 3931 taacaatgtctctcaggaagacaaacacactgcatataatatc-ttacagatctaacaac 3873
Query: 641 gaacaagatccaaagcctgagttagagata-ttcatgtttggcatgcttaccttggactt 699
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 3872 gaacaagatccaaagcctgagttagagatatttcatgtttgtcatgcttaccttgaactt 3813
Query: 700 ttctcccatataaa-ggcaacgatctatccggaat-atggagt-tttaaggggaattggg 756
|||||| |||||| |||||||||||| |||||| ||| ||| || ||| |||||||||
Sbjct: 3812 ttctccagtataaagggcaacgatctagtcggaataatgaagtattaaagtggaattggg 3753
Query: 757 atggat 762
||||||
Sbjct: 3752 atggat 3747
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6818
Number of Sequences: 1807
Number of extensions: 6818
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)