BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF10RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1455 0.0
>3x_Contig1807
Length = 66587
Score = 1455 bits (734), Expect = 0.0
Identities = 853/880 (96%), Gaps = 10/880 (1%)
Strand = Plus / Plus
Query: 33 aagctttagagaac-tagccatttgtcttgaaaaaaatctgtgatgttcttataggtatc 91
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8882 aagctttagagaacatagccatttgtcttgaaaaaaatctgtgatgttcttataggtatc 8941
Query: 92 tgtctaggtgaatgttggatttttttttatgggttttgactgcactgaatgagactggct 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8942 tgtctaggtgaatgttggatttttttttatgggttttgactgcactgaatgagactggct 9001
Query: 152 ttgttaaaacaaagagataccttaatttggcctcgaactcccagatatatatatacaaag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9002 ttgttaaaacaaagagataccttaatttggcctcgaactcccagatatatatatacaaag 9061
Query: 212 acggtaaagaaagacttccaaagggttcagtcaaaatctcgcatacaagtcgccttgatg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9062 acggtaaagaaagacttccaaagggttcagtcaaaatctcgcatacaagtcgccttgatg 9121
Query: 272 aaagccctataaatcttcaaactcacagatttaggggcccattcacactctctcagcata 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9122 aaagccctataaatcttcaaactcacagatttaggggcccattcacactctctcagcata 9181
Query: 332 tttcaacctcattacaagtaagtagcatttagaaatggcataaaagtgagtctggccaaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9182 tttcaacctcattacaagtaagtagcatttagaaatggcataaaagtgagtctggccaaa 9241
Query: 392 aataggtggtatctatttttgaactctacccagtggagagaagattccgaaaacatctac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9242 aataggtggtatctatttttgaactctacccagtggagagaagattccgaaaacatctac 9301
Query: 452 caaacaggccactcttccttgtttccaatgtcccattaggccgtttgaatgaaagtcttt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9302 caaacaggccactcttccttgtttccaatgtcccattaggccgtttgaatgaaagtcttt 9361
Query: 512 ggtaacttgcaataagacttgtcgagctactgcaattattacaccatcagaaacagacta 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9362 ggtaacttgcaataagacttgtcgagctactgcaattattacaccatcagaaacagacta 9421
Query: 572 aaaacccncatgaacgccgaatcgccgaaattgctggtcatctagctattaataacaatt 631
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9422 aaaacccccatgaacgccgaatcgccgaaattgctggtcatctagctattaataacaatt 9481
Query: 632 ctgaccgcttncatctgcactgctttcttttcttttctatccaggggat-agtatctacc 690
|||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct: 9482 ctgaccgcttccatctgcactgctttctttcctttcctatccaggggataagtatctacc 9541
Query: 691 gacacaatccaaatct-ttgagacgttcctgagaacatgcaagaccctttctgttgctat 749
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9542 gacacaatccaaatctctggagacgttcctgagaacatgcaagaccctttctgttgctat 9601
Query: 750 gggagaa-tctgatctcccttttgcgatactgttgcaatatggcactactatactgagtg 808
|||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 9602 -ggagaattctgatct-cctcttgcagtactgttgcaatatggcactactatactgagtg 9659
Query: 809 attcattc-cattttcagaattaatttaaatgggggggataaacgtccgtaatgaacgaa 867
|||||||| |||||||||| || || ||||| |||| |||||||||| |||||||||| |
Sbjct: 9660 attcattcacattttcagatttcatctaaat-ggggtgataaacgtcagtaatgaacg-a 9717
Query: 868 ggaacaggggaaagagttccttgaaaaaattggggtggct 907
|||||| |||||||||| | ||| |||| |||||||||||
Sbjct: 9718 ggaacaagggaaagagtacgttg-aaaagttggggtggct 9756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9213
Number of Sequences: 1807
Number of extensions: 9213
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)