BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF11RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1189 0.0
>3x_Contig1666
Length = 16162
Score = 1189 bits (600), Expect = 0.0
Identities = 736/770 (95%), Gaps = 10/770 (1%)
Strand = Plus / Plus
Query: 48 taatttttcaaaattttcagcttgtaagaagaagggacacctgtgcacctcataataaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7768 taatttttcaaaattttcagcttgtaagaagaagggacacctgtgcacctcataataaat 7827
Query: 108 gtaaaagaagctataacatacataaggcagtctataatttaatcatgctaattattcaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7828 gtaaaagaagctataacatacataaggcagtctataatttaatcatgctaattattcaga 7887
Query: 168 tgcagtggatccactcaatgagtccatatcctgaccattttatctttcccaccgctacat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7888 tgcagtggatccactcaatgagtccatatcctgaccattttatctttcccaccgctacat 7947
Query: 228 acacgtttaccgtctacagaccaatctacagtgtagacttcatcttgatgaccgggtaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7948 acacgtttaccgtctacagaccaatctacagtgtagacttcatcttgatgaccgggtaga 8007
Query: 288 tcgacggacagttttctagttttgacatcccagacttttaaagtggtatctttggaacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8008 tcgacggacagttttctagttttgacatcccagacttttaaagtggtatctttggaacaa 8067
Query: 348 gaaacgagtagtctacagtcgcttgaccaagctacttggtagacactcgctacatgtcct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8068 gaaacgagtagtctacagtcgcttgaccaagctacttggtagacactcgctacatgtcct 8127
Query: 408 ctaaaggtggataggaatttaccatcccttccatcccataatttaatggagttgtcaaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8128 ctaaaggtggataggaatttaccatcccttccatcccataatttaatggagttgtcaaag 8187
Query: 468 gatgcagaaacaatgtaacggccatctggcgaaaatgcaacgtggttgacgagcttttgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8188 gatgcagaaacaatgtaacggccatctggcgaaaatgcaacgtggttgacgagcttttgg 8247
Query: 528 tggccggtcattctgggtat-ngtttagtagacttcaaggggtttcacagatacatagta 586
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct: 8248 tggccggtcattctggtaataggtttagtagacttcaaggggttccacagatacatagta 8307
Query: 587 aaatcgtcactggcagttaccatcagttcttcgaagtccccttttctttt-gcaactttt 645
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 8308 aaatcgtcactggcagttaccatcagttcttcgaagtcaccttttcttttagcaactttt 8367
Query: 646 tcgtaattttttcagaaccttctgttgggctttctttcagttgaaccaggagtttccccc 705
|||||| ||||||||| ||||||||||||||| ||||| |||| |||||||||| |||
Sbjct: 8368 tcgtaa-tttttcagagccttctgttgggctt--cttcaggtgaagcaggagtttcgccc 8424
Query: 706 ttgtgattcaacccaccg-gtttttatgcttaaacttgttg-aagggaaaaatgatttac 763
||||||| ||| ||||| || || |||| ||| | ||||| ||| |||| |||||| ||
Sbjct: 8425 ttgtgatcgaacgcaccgagtcttaatgcataatc-tgttgaaagtgaaagatgattaac 8483
Query: 764 ccattgggcgggggaattttaggatattgatacacttaccggttcaaatt 813
||| |||||| | | ||||||||||||||||||| ||||| |||||||||
Sbjct: 8484 ccaatgggcgtgtg-attttaggatattgatacatttacc-gttcaaatt 8531
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6732
Number of Sequences: 1807
Number of extensions: 6732
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)