BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZF12RM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 791 0.0
>3x_Contig1475
Length = 10676
Score = 791 bits (399), Expect = 0.0
Identities = 456/474 (96%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 22 gcttaccgcaaaggaagagcactcatcaagagtccaagtcctagtttattcgaacaaaaa 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 gcttaccgcaaaggaagagcactcatcaagagtccaagtcctagtttattcgaacaaaaa 2751
Query: 82 attcttagagaaaaattgttgcggtttcaaattagatacggaaaagaagagatacgtcca 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2752 attcttagagaaaaattgttgcggtttcaaattagatacggaaaagaagagatacgtcca 2811
Query: 142 tacagctgttaaaagggttaaagccaactcactgcccaatattgctaaaccagagttctt 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2812 tacagctgttaaaagggttaaagccaactcactgcccaatattgctaaaccagagtccgt 2871
Query: 202 aacaaaaagcttctccatcgatggtgctggatcgggaaagatatacccacagaaaaatgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2872 aacaaaaagcttctccatcgatggtgctggatcgggaaagatatacccacagaaaaatgg 2931
Query: 262 attcagtgtggctttcactactagagagaacagtaacgcatcaggtggaagtagtatgga 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 attcagtgtggctttcactactagagagaacagtaacgcatcaggtggaagtagtatgga 2991
Query: 322 catgtctacatcgccacattatactgaagaagctgtgaaagattacacgactcctgctaa 381
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 2992 catgtctacatcgccacattatactgaagaagctgtgaaagataacacgaatactgctaa 3051
Query: 382 ccctgtatggaattacagtggttcttttgctccccaaccgccactgatttttaatgacac 441
|| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 3052 ccgtgtatggaattacagtggttcttctgctcnccaaccgccactgagttttaatgtcac 3111
Query: 442 gccatcatttttctttttatccacagttgaaaagaactgtgaatgaaaaatctt 495
||||||||||| | | | | ||||||||| |||||| || ||||||||||||||
Sbjct: 3112 gccatcattttccgtctcaaccacagttg-aaagaagtgagaatgaaaaatctt 3164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9135
Number of Sequences: 1807
Number of extensions: 9135
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)