BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG01FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 954 0.0
>3x_Contig1449
Length = 7865
Score = 954 bits (481), Expect = 0.0
Identities = 619/653 (94%), Gaps = 11/653 (1%)
Strand = Plus / Plus
Query: 87 tgaaaacgttatcggtgacgttattcaaccagccggtctgggaacataggaatttatcta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2691 tgaaaacgttatcggtgacgttattcaaccagccggtctgggaacataggaatttatcta 2750
Query: 147 gttttgccaccacagaatctttcttgacaatggcaagaacatctagtggttcatcagcgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2751 gttttgccaccacagaatctttcttgacaatggcaagaacatctagtggttcatcagcgt 2810
Query: 207 aagaagtgaaatctgattcgttcaagtctctcaaataagaagcaactgattgagcaccgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2811 aagaagtgaaatctgattcgttcaagtctctcaaataagaagcaactgattgagcaccgg 2870
Query: 267 attggatgtctgggtcactttgtaagatatctctcaaagcgtcagaggatgggaattcct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2871 attggatgtctgggtcactttgtaagatatctctcaaagcgtcagaggatgggaattcct 2930
Query: 327 gntaagtagatcttcgaa-taacttgtagcctcttctaat-aaagtacctgcaccagaat 384
| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2931 gtaaagtagatcttcgaattaacttgtagcctcttctaatcaaagtacctgcaccagaat 2990
Query: 385 cggtgaacaattctttttgcaaatcttgaacattgatgatggccacggacgaagatcttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2991 cggtgaacaattctttttgcaaatcttgaacattgatgatggccacggacgaagatcttg 3050
Query: 445 gc-agaagtccaacanatttttaatttctttgattttcaacttatttccgaacttgaccc 503
|| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3051 gcaagaagtccaacaaatctttaatttctttgattttcaacttagttccgaacttgaccc 3110
Query: 504 aactttgcttcatcaattcatcgtattcttcatctaag-taatcactgaaaacttctcac 562
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 3111 aactttgcttcatcaattcatcgtattcttcatctaagttaatcactgaaaccttctcac 3170
Query: 563 cggtgctaccgttaatgataccgncctttctcattcaagtaaaca--ttttagaaggtta 620
||||||||||||||||||||||| || |||||||||||||||||| |||||| |||||
Sbjct: 3171 cggtgctaccgttaatgataccgccc-ttctcattcaagtaaacaatttttag-aggttc 3228
Query: 621 aaagacttttacaagttaaccagcagcgacttcagctttgacatt-aacatttgaaccga 679
||||||| | |||||| |||||||||||| ||||| |||||||| |||||||| |||
Sbjct: 3229 aaagactctagcaagttcaccagcagcgacatcagcattgacattcaacatttg-accag 3287
Query: 680 aaggattttc-gcccaccaaatcaaaattggtaagaacccagccttgtttgaa 731
||||| |||| ||| || || ||||||||||||||| ||||||||| |||||
Sbjct: 3288 aaggagtttcggccaacgaagtcaaaattggtaagacaccagccttgattgaa 3340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7304
Number of Sequences: 1807
Number of extensions: 7304
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)