BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC44ZG02FM1.SCF screened BAC_end (896 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1280 1068 0.0 >3x_Contig1280 Length = 5058 Score = 1068 bits (539), Expect = 0.0 Identities = 607/623 (97%), Gaps = 5/623 (0%) Strand = Plus / Minus Query: 86 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1722 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 1663 Query: 146 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1662 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 1603 Query: 206 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1602 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 1543 Query: 266 gcgaatccttgacagcattcttctcttactcttcttcagttttatcactagaaccctcat 325 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1542 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 1483 Query: 326 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1482 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 1423 Query: 386 ccacaatgaacctcactagtgactcatcattaatccgtacgctgctcattagctcacatc 445 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1422 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 1363 Query: 446 cagcaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 505 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1362 cagaaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 1303 Query: 506 tcacagtcaataacttcttgcaacgatcagcaccaaggtgattattattgccccaatgaa 565 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 1243 Query: 566 tgaatttgatcaaaattttgggc-aatcccaccc-atttcatacactacatctttattct 623 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct: 1242 tgaatttgatcaaaattttgggcaaatcccacccaatttcatacactacatctttattct 1183 Query: 624 gttgtaaaagggattggacttcactcaaa-attcatac-tttggtctaaacttcctttga 681 |||||||||||||| |||||||||||||| |||||||| |||| ||||||||||| |||| Sbjct: 1182 gttgtaaaagggataggacttcactcaaatattcatacttttgttctaaacttcccttga 1123 Query: 682 atttca-ttctttggaataaagg 703 | |||| ||||| ||||||||| Sbjct: 1122 agttcacttcttcagaataaagg 1100 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8870 Number of Sequences: 1807 Number of extensions: 8870 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 896 length of database: 10,358,551 effective HSP length: 16 effective length of query: 880 effective length of database: 10,329,639 effective search space: 9090082320 effective search space used: 9090082320 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)