BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG02RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1392 1536 0.0
>3x_Contig1392
Length = 9092
Score = 1536 bits (775), Expect = 0.0
Identities = 834/847 (98%), Gaps = 5/847 (0%)
Strand = Plus / Minus
Query: 47 atcctgtgttcagtttcgccactatttcattcgataaaggagagtatagccatatttccc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 atcctgtgttcagtttcgccactatttcattcgataaaggagagtatagccatatttccc 5493
Query: 107 ctaggtttagacccagaactaccaatggtgtgtcattgtaagtaatccattgtatgcatg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 ctaggtttagacccagaactaccaatggtgtgtcattgtaagtaatccattgtatgcatg 5433
Query: 167 tacagcagacgtctttcccctccaaatagagaaaattatcgttcactaaaccagatttgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5432 tacagcagacgtctttcccctccaaatagagaaaattatcgttcactaaaccagatttgg 5373
Query: 227 aggcagttgttggctccactgatacccgctgtttatccaaagcggtggaaacgtatgcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 aggcagttgttggctccactgatacccgctgtttatccaaagcggtggaaacgtatgcaa 5313
Query: 287 aatattgtccggttggatcatattgtgataatacgactggcgaagctgttgccatcgtta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 aatattgtccggttggatcatattgtgataatacgactggcgaagctgttgccatcgtta 5253
Query: 347 agcttgctattgttattcgtgtggtagagtgtagacctctagcttaaacagtacgaaagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 agcttgctattgttattcgtgtggtagagtgtagacctctagcttaaacagtacgaaagc 5193
Query: 407 cggtgattgttcaattaatatcccaagacgttttatcgaaacactttatgaaagaagtaa 466
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5192 cggtgattgttcaattaatatcccaagacgttttatcgaaacactttaggaaagaagtaa 5133
Query: 467 gtacacaaaagtaaatactgtgcgatgagctcagatgagatgcgatgagatgagctatga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5132 gtacacaaaagtaaatactgtgcgatgagctcagatgagatgcgatgagatgagctatga 5073
Query: 527 aaagtttcaaatgaaaagctttagcttggaaaggagaaagaaaagtgagatttacttaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5072 aaagtttcaaatgaaaagctttagcttggaaaggagaaagaaaagtgagatttacttaca 5013
Query: 587 aaaaacaagtgccgggtaataagaagttagcatatattgttcacgtgatttggagcatat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5012 aaaaacaagtgccgggtaataagaagttagcatatattgttcacgtgatttggagcatat 4953
Query: 647 agccagtggtccccaatttaaggcttttcttcaggatacatccactgagctgagttcgtt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952 agccagtggtccccaatttaaggcttttcttcaggatacatccactgagctgagttcgtt 4893
Query: 707 aactcagcttttgcaatctta-tttacaacctccaaacattgccttcctgctttc-agtt 764
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 4892 aactcagcttttgcaatcttattttacaacctccaaacattgccttcctgctttcaagtt 4833
Query: 765 atacacttcatatcttctaac-aacactagttagcatttctactgtgatgagaggaagct 823
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 atacacttcatatctcctaacaaacactagttagcatttctactgtgatgagaggaagct 4773
Query: 824 gggtgattaacaccacatatagcaattaccgtc-agttagggaagagctcctgcctaaca 882
||||||||||||| ||||| || |||| |||| ||| ||| ||||||||||||||||||
Sbjct: 4772 gggtgattaacacaacataaag-aatttacgtcaagtaaggaaagagctcctgcctaaca 4714
Query: 883 accaagg 889
|||||||
Sbjct: 4713 accaagg 4707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6268
Number of Sequences: 1807
Number of extensions: 6268
Number of successful extensions: 232
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)