BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG03FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 884 0.0
>3x_Contig1777
Length = 26319
Score = 884 bits (446), Expect = 0.0
Identities = 528/551 (95%), Gaps = 4/551 (0%)
Strand = Plus / Plus
Query: 84 gcttctctacaaaaatacaatccatttgctctgatcccgaaaacaattcagcgactacgt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11068 gcttctctacaaaaatacaatccatttgctctgatcccgaaaacaattcagcgactacgt 11127
Query: 144 aaagatttggattatattttcttgccaggtccaagaagtactcgcccacgtgaagtgggg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11128 aaagatttggattatattttcttgccaggtccaagaagtactcgcccacgtgaagtgggg 11187
Query: 204 tagaatgacaattatcgattctaaacccgtcaaaaatggttgcctgaagtcttgtatact 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11188 tagaatgacaattatcgattctaaacccgtcaaaaatggttgcctgaagtcttgtatact 11247
Query: 264 ctgacatcctctcccataaatacggagaatcctcaggtgcggaaccgtaccttaatttca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11248 ctgacatcctctcccataaatacggagaatcctcaggtgcggaaccgtaccttaatttca 11307
Query: 324 cacagtccccccagacaatcacttctctacgtaggtatgcccttggagtcctttgatgca 383
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11308 cacagtccccccagacaatcacttctctacgtaggtatg-ccttggagtcctttgatgca 11366
Query: 384 naatctactagtggattagagttnccaatccagccattgttagccaatgcatattcctta 443
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 11367 aaatctactagtggattagagttccaaatccagccattgttagccaatgcatattcctta 11426
Query: 444 ccatctttggcaagcaatctggtgaaataaggctcagttaatggcgatttcagattgatt 503
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 11427 ccatctttggcaagcaatctggtgaaataaggctcagttaatggcgattcaggagtgatt 11486
Query: 504 ttttccatctttgga-catgatcatcaatcc-naaatactttatgcgattgaataattgg 561
||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 11487 tttcccatctttggaccatgatcatcaatccgcaaatactttatgcgattgtataattgg 11546
Query: 562 tctaagattacgcggacgtccttattctaatccttggaacagggtaaatttcaattcatc 621
|||||||||||||| ||||||| || || |||||| | |||||||| |||||||||||
Sbjct: 11547 tctaagattacgcgaacgtcctcatcgtattccttgtacaagggtaaa-ttcaattcatc 11605
Query: 622 ccaaattttgc 632
| |||||||||
Sbjct: 11606 caaaattttgc 11616
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7987
Number of Sequences: 1807
Number of extensions: 7987
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)