BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG03RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1493 0.0
>3x_Contig1777
Length = 26319
Score = 1493 bits (753), Expect = 0.0
Identities = 816/833 (97%), Gaps = 5/833 (0%)
Strand = Plus / Minus
Query: 48 ctctcttgttgatgatgttcttgtggaaaccccaccaccaataggaagccatagcaccac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19986 ctctcttgttgatgatgttcttgtggaaaccccaccaccaataggaagccatagcaccac 19927
Query: 108 caatagcgaaaccgatggtgatatcggccaagattctctttctaatagtaccagtgattg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19926 caatagcgaaaccgatggtgatatcggccaagattctctttctaatagtaccagtgattg 19867
Query: 168 gagcaattgcagacattattctttgatgtgaagtgagagtgattgatgtgagatgaacaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19866 gagcaattgcagacattattctttgatgtgaagtgagagtgattgatgtgagatgaacaa 19807
Query: 228 accgttaaggatagcaacagctaatgaaaaaggctaaagtcaacactaagaggggacaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19806 accgttaaggatagcaacagctaatgaaaaaggctaaagtcaacactaagaggggacaga 19747
Query: 288 ggaaagatatacaaagtactaatcaaatatcaaaatttcaagaagtaaaagaaaatcaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19746 ggaaagatatacaaagtactaatcaaatatcaaaatttcaagaagtaaaagaaaatcaga 19687
Query: 348 aaaaccatacgactaaagtaaagaaccgaagacagttagaaaaaaaattaaccaaaacct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19686 aaaaccatacgactaaagtaaagaaccgaagacagttagaaaaaaaattaaccaaaacct 19627
Query: 408 gtaatggatagtagagccaggtaagtttatttcaattttttttaatttttaaagtttctc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19626 gtaatggatagtagagccaggtaagtttatttcaattttttttaatttttaaagtttctc 19567
Query: 468 gatttttcaagctgtcaccaagagggaattgacattcagaactccagtaataccgagtca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19566 gatttttcaagctgtcaccaagagggaattgacattcagaactccagtaataccgagtca 19507
Query: 528 tactgtagtgtggattttcaagacaatatctgattgagactctcagtaggttccggtaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19506 tactgtagtgtggattttcaagacaatatctgattgagactctcagtaggttccggtaga 19447
Query: 588 acctactatcggttgcccatcaatatagccaagagagaggtatcgcttttcttcctctaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19446 acctactatcggttgcccatcaatatagccaagagagaggtatcgcttttcttcctctaa 19387
Query: 648 tactgacagcaccggattggcaaagagggaagatntcccgtcagagaaactctggggcag 707
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19386 tactgacagcaccggattggcaaagagggaagatttcccgtcagagaaactctggggcag 19327
Query: 708 ccattgatcgcaggtcatgtgcctcttatcatcttnatgtagttagtacaagtagacaag 767
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19326 ccattgatcgcaggtcatgtgcctcttatcatcttagtgtagttagtacaagtagacaag 19267
Query: 768 aaa-gatctcgcgttaaacccgaa--ttccattagccaatgatatccccagattcaactg 824
||| |||||||||||||| ||||| | |||||||||||||||||||| ||||| ||
Sbjct: 19266 aaaggatctcgcgttaaaaccgaaattcccattagccaatgatatcccaggattcgacgt 19207
Query: 825 nagtgtgtctgtattca-aaaaatatgtacacgggg-aattacgttccacgaa 875
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct: 19206 gagtgtgtctgtattcagaaaaatatgtacacggggaaatcacgttccacgaa 19154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7417
Number of Sequences: 1807
Number of extensions: 7417
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)