BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG04FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 890 0.0
>3x_Contig1712
Length = 23668
Score = 890 bits (449), Expect = 0.0
Identities = 600/641 (93%), Gaps = 9/641 (1%)
Strand = Plus / Plus
Query: 86 tctaagtagttgaggtatgggagatgtcaatatttccatttcttactacgaagtattttt 145
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4173 tctaagtagttgaggtatgggagatgtcaatatttccatgtcttactacgaagtattttt 4232
Query: 146 cgttaactttatacagtcgctaatctaatccactttactctccgatataaacaggctgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233 cgttaactttatacagtcgctaatctaatccactttactctccgatataaacaggctgaa 4292
Query: 206 tattttttggtagatcttaggcttcattaactataacaatttccaaaatcacttttcggt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293 tattttttggtagatcttaggcttcattaactataacaatttccaaaatcacttttcggt 4352
Query: 266 tagtatcctttttttggacagcgccaaggttcacattgaatgtattaagttgaaaactgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4353 tagtatcctttttttggacagcgccaaggttcacattgaatgtattaagttgaaaactgt 4412
Query: 326 tgtttactaagatcttttcatttcacagattgaaactca-tatccaacaagtatacttct 384
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 4413 tgtttactaagatcttttcatttcacagattgaa-ctcaatatccaacaagtatacttct 4471
Query: 385 cctggcatttagatcaattcactataaaaaa-gggcgaagaagtatatanacatcggata 443
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||
Sbjct: 4472 cctggcatttagatcaattcactataaaaaaagggcgaagagtaatataaacatcggata 4531
Query: 444 tttaatctcaattacagataggcaaagttcaattacgcattagctacattnttcacgtct 503
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4532 tttaatctcaattacagataggcaaagttcaattacgcattagctacatttttcacgtct 4591
Query: 504 ttttatttctgcccttcaattcatgtnncttcannttgacttcgatcaatttcttagaac 563
||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 4592 tttaatttctgcccttcaattcattgtccttcaatttgacttcgatcaattccttagaac 4651
Query: 564 caata-tgactaacacanggcaatctaatttggttttacccaccatttcaacgctgttac 622
||||| ||||||||||| |||||||||||||||||||||| | || |||||||||||||
Sbjct: 4652 caataatgactaacacaaggcaatctaatttggttttaccaccaatatcaacgctgttac 4711
Query: 623 cacggna-tattttaac-gccaaacaatccattcctatttgctaactgaaacc-catatc 679
||| | | || || ||| |||||||||||||| | ||| |||| |||| |||| ||||||
Sbjct: 4712 caccgcaatacttcaacagccaaacaatccatccatatatgctcactgcaaccacatatc 4771
Query: 680 c-aatggatttggggccttaatccaaattcaaccaattaag 719
| |||| || || |||||| ||||||||||||||||||||
Sbjct: 4772 ccaatgcatc-ggtgccttactccaaattcaaccaattaag 4811
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7601
Number of Sequences: 1807
Number of extensions: 7601
Number of successful extensions: 347
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)