BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG05FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 876 0.0
>3x_Contig1804
Length = 51183
Score = 876 bits (442), Expect = 0.0
Identities = 520/541 (96%), Gaps = 4/541 (0%)
Strand = Plus / Minus
Query: 82 tgattgcaaatccgataaatcagtcatgttcgggtgctcgattctataatcgccctttac 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24925 tgattgcaaatccgataaatcagtcatgttcgggtgctcgattctataatcgccctttac 24866
Query: 142 cataggatttatggccacagccagcgttccgaagcctatttggctcaaaagtagcaatgg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24865 cataggatttatggccacagccagcgttccgaagcctatttggctcaaaagtagcaatgg 24806
Query: 202 gttcattgttggtgctgtaactgtttctaagtggctaaagaccaataaatataacgtagt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24805 gttcattgttggtgctgtaactgtttctaagtggctaaagaccaataaatataacgtagt 24746
Query: 262 gaaaaagataaaatcgtatgtgagctttaactgtacctggccttaaacttaaattatgtg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24745 gaaaaagataaaatcgtatgtgagctttaactgtacctggccttaaacttaaattatgtg 24686
Query: 322 ttaaacttatactttttttttctgttttgcagaagtatttttttagcctttcgaga-tag 380
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 24685 ttaaacttatactttttttttctgttttgcagaagtatttttttagcccttcgagattag 24626
Query: 381 gctccatcaaaaa-ctncacagagcactcacttcgtgacagcgtagtaacttctttctct 439
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24625 gctccatcaaaaacctccacagagcactcacttcgtgacagcgtagtaacttcttcctct 24566
Query: 440 tttcttcaccagcaagtttactatttacaagacattctcatatcaggcgtttccta-aaa 498
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 24565 tttcttcaccagcaagtttactattacaaagacattctcatatcaggcgtttcctagaat 24506
Query: 499 gcccaaaatataaaattatatgcgtatattttgtttaaatagaaaccaacttatgctttt 558
||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24505 gccaaaaatataaatttatatgcgtatattttgtttaaatagaaaccaactcatgctttt 24446
Query: 559 atgcttcgacctcatttttc-aagatgccaaaggatttacatttgaaggttgtacaggta 617
||||||||||||||| || | ||||||| || | ||| |||||||| |||||||||||||
Sbjct: 24445 atgcttcgacctcatcttccaaagatgcgaatgtattaacatttgagggttgtacaggta 24386
Query: 618 g 618
|
Sbjct: 24385 g 24385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,697
Number of Sequences: 1807
Number of extensions: 16697
Number of successful extensions: 2249
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)