BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG05RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1394 0.0
>3x_Contig1764
Length = 22510
Score = 1394 bits (703), Expect = 0.0
Identities = 782/805 (97%), Gaps = 4/805 (0%)
Strand = Plus / Minus
Query: 48 acacagggaactggaaaccttttattagagcacctgagattgacattcagaccgatcgtg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11031 acacagggaactggaaaccttttattagagcacctgagattgacattcagaccgatcgtg 10972
Query: 108 acatctactgtgttgatgaggttactggaaaaaaatcagtttttgttgagcttctggata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10971 acatctactgtgttgatgaggttactggaaaaaaatcagtttttgttgagcttctggata 10912
Query: 168 gcggagacatgtgctcgaaactatctgataaccttgtcaagtagtacaaacatttctacg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10911 gcggagacatgtgctcgaaactatctgataaccttgtcaagtagtacaaacatttctacg 10852
Query: 228 aaactgaggttctcatacagtatcgactaaaccaaggaactgttgatatgaaattattac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10851 aaactgaggttctcatacagtatcgactaaaccaaggaactgttgatatgaaattattac 10792
Query: 288 gaaaaaatgaatagttttctgtagtaaacaatataataaataatgcaattgaaaaaaaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10791 gaaaaaatgaatagttttctgtagtaaacaatataataaataatgcaattgaaaaaaaaa 10732
Query: 348 tttaaactcaacaccgatttctgattatgggaaacccctcatagaagacttatgttatac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10731 tttaaactcaacaccgatttctgattatgggaaacccctcatagaagacttatgttatac 10672
Query: 408 tggtgctgatctcgttttaaatattagcatcacttaagaaaccattcttcctttaaaatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10671 tggtgctgatctcgttttaaatattagcatcacttaagaaaccattcttcctttaaaatg 10612
Query: 468 agtactaaatgtgacactttcatcaatggtctgtcgcaagtccgggtaaaatgttacgtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10611 agtactaaatgtgacactttcatcaatggtctgtcgcaagtccgggtaaaatgttacgtt 10552
Query: 528 tctaatgataaaaaaatttcgatatcattgaatagcattcaattcgantaatcttaaaca 587
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10551 tctaatgataaaaaaatttcgatatcattgaatagcattcaattcgataaatcttaaaca 10492
Query: 588 cagctcagctactgattntgactgaagagctaaattagttcctatcgtcgactattgtga 647
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10491 cagctcagctactgattttgactgaagagctaaattagttcctatcgtcgactattgtga 10432
Query: 648 ncagggtccanaactatcagcaattcgttgaatagaatattcacttttttggttttaact 707
||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 10431 caaggttccaaaactatcagcaattcgttgaatagataattcactttttgggtttaaact 10372
Query: 708 gggctgntagtcctttagcttgaagacagatatacttacttgattcacaattcgaaatag 767
|||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10371 gggctgttagtcc-ttagcttgaagacagatatacttactgaattcacaattcgaaatag 10313
Query: 768 aaagctatgtnccatatattttatttgttaaaaaatt-caggat-gccccagtggc-aag 824
|||||||||| |||||||| | ||||||||||||||| |||||| || | |||||| |||
Sbjct: 10312 aaagctatgtcccatatatctaatttgttaaaaaattccaggatagcacaagtggcaaag 10253
Query: 825 acggacaagccattgtttcgtccag 849
|||||||||||||||||||||||||
Sbjct: 10252 acggacaagccattgtttcgtccag 10228
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7811
Number of Sequences: 1807
Number of extensions: 7811
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)