BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG06FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 930 0.0
>3x_Contig1804
Length = 51183
Score = 930 bits (469), Expect = 0.0
Identities = 545/567 (96%), Gaps = 3/567 (0%)
Strand = Plus / Minus
Query: 88 gcagcttgatttcttctgatttcagctggttcagagactacaatcttggaggcaccatga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22796 gcagcttgatttcttctgatttcagctggttcagagactacaatcttggaggcaccatga 22737
Query: 148 ccttgcaaagctaaaatggtggctaatccaattggacctgcgccaagaactaaggcggat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22736 ccttgcaaagctaaaatggtggctaatccaattggacctgcgccaagaactaaggcggat 22677
Query: 208 tggcccttctgttacttggagattctaacagcatgccatgagacggagattggttcgact 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22676 tggcccttctgtaacttggagattctaacagcatgccatgagacggagattggttcgact 22617
Query: 268 aaggctgcaacgtccaatggtaaagtgtttggaatcttaacaacgtgcttttcactaaca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22616 aaggctgcaacgtccaatggtaaagtgtttggaatcttaacaacgtgcttttcactaaca 22557
Query: 328 acgactttttcagcaaaaccaccactgtgaactcctagacccatganacccaaatgggca 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 22556 acgactttttcagcaaaaccaccactgtgaactcctagacccatgaaacccaaatgggca 22497
Query: 388 caacagttgtagaaccctctttgacaagcagcacattcagcatccttagcatgtgcagcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22496 caacagttgtagaaccctctttgacaagcagcacattcagcatccttagcatgtgcagcg 22437
Query: 448 ttaggcccagtgtaatgatcaagacatgtaccgntggcttctac-acaacatgatcacca 506
||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 22436 ttaggccaagtgtaatgatcaagacatgtaccggtggcttctacaacaacatgatcacca 22377
Query: 507 gccttgatgttgtttacttttggtccaacttttgatacgatacccgacattttatgaccc 566
|||||||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 22376 gccttgatgttggttacttttggtccaacttttgatacgataccggacatctcatgaccc 22317
Query: 567 atagtttgagg-aattcaagaacacttaaattgtggaccttgccattttttggaaagaaa 625
|||| |||||| ||| ||||| |||| | || |||||||||||||| || ||||||||||
Sbjct: 22316 atagcttgaggcaatccaagaccactaacatcgtggaccttgccatcttctggaaagaaa 22257
Query: 626 ata-gaccatttaggttttcgggtaaa 651
||| |||||| ||||| |||| |||||
Sbjct: 22256 ataggaccatctaggtattcgtgtaaa 22230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7053
Number of Sequences: 1807
Number of extensions: 7053
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)