BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG06RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1199 0.0
>3x_Contig1764
Length = 22510
Score = 1199 bits (605), Expect = 0.0
Identities = 679/700 (97%), Gaps = 4/700 (0%)
Strand = Plus / Minus
Query: 55 aaaaaaagtgttgtgatatgtcaaagagtattcaggaaatggtgcatttcaacaggtttc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12848 aaaaaaagtgttgtgatatgtcaaagagtattcaggaaatggtgcatttcaacaggtttc 12789
Query: 115 aattgagtttatggtattagatcagctctgtaatgctaaaaaattcagaaattgtgttag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12788 aattgagtttatggtattagatcagctctgtaatgctaaaaaattcagaaattgtgttag 12729
Query: 175 aaggagtttcataacggatatggatgattaaatctgccaggagcggggtgcgtgtcagat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12728 aaggagtttcataacggatatggatgattaaatctgccaggagcggggtgcgtgtcagat 12669
Query: 235 ttatcacttcttatataaaaaaactagctttcgaggatgcgtcctgttccctgctactct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12668 ttatcacttcttatataaaaaaactagctttcgaggatgcgtcctgttccctgctactct 12609
Query: 295 ccacttcatcctgagtaatagacattcatcaatcacagcactaattcgctgaacagtcaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12608 ccacttcatcctgagtaatagacattcatcaatcacagcactaattcgctgaacagtcaa 12549
Query: 355 ttattaaaaaatgactgaagaatgtttaaaagaagttgcaactttttccaacctctcaga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12548 ttattaaaaaatgactgaagaatgtttaaaagaagttgcaactttttccaacctctcaga 12489
Query: 415 tcccacaagaacgaacagtatcgatactacagctgatgttactcttcccaaaaatgagtt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12488 tcccacaagaacgaacagtatcgatactacagctgatgttactcttcccaaaaatgagtt 12429
Query: 475 aaaacagtcaattaaaccgtttcatgttttcatgatgtctactgncacaggtattgggac 534
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12428 aaaacagtcaattaaaccgtttcatgttttcatgatgtctactgcaacaggtattgggac 12369
Query: 535 cggtttattagtggggaacggtagatcaattgctattgcggnggttggtggtactttagt 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12368 cggtttattagtggggaacggtagatcaattgctattgcgggggttggtggtactttagt 12309
Query: 595 tgggtacttaaattatgntantatgttgacatgttgcatgcaaactgttggtgagcttgt 654
||| ||||||| | || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 12308 tggttacttaattattggtattatgttgacatgttgcatgcaaactgttggtgagcttgt 12249
Query: 655 tgttgctttttc-agtatgcctgntgggtttacatcttagggaaagcg-ttcatagaccc 712
|||||||||| | |||||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct: 12248 tgttgcttttccaagtatgcctggtgggtttacatcttatggaaagcgtttcatagaccc 12189
Query: 713 gt-tggtggcttta-catttcttgggtaatttttttaaat 750
|| || ||||||| |||||||||| || ||||| |||||
Sbjct: 12188 gtctgtgggctttaccatttcttggttattttttctaaat 12149
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6123
Number of Sequences: 1807
Number of extensions: 6123
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)