BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG07FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig754 1146 0.0
>3x_Contig754
Length = 2158
Score = 1146 bits (578), Expect = 0.0
Identities = 619/626 (98%), Gaps = 5/626 (0%)
Strand = Plus / Plus
Query: 88 cacaattcatatctaccattgcatcgccatttgtgacaatattggctacatatcatcagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cacaattcatatctaccattgcatcgccatttgtgacaatattggctacatatcatcagt 805
Query: 148 cgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactcttgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactcttgc 865
Query: 208 aatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacgatt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacgatt 925
Query: 268 tggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatattata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatattata 985
Query: 328 tcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 tcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaatt 1045
Query: 388 cgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaagtc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 cgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaagtc 1105
Query: 448 cagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagctgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 cagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagctgg 1165
Query: 508 caaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgcaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 caaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgcaa 1225
Query: 568 ttgtgtantgag-ttgaaaaggatgatgattatgacgaagaagacccgtacgaagatccg 626
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 ttgtgta-tgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatccg 1284
Query: 627 ttctgatcgctagagttctcggtttattctagtttcatttaattcttttctcgtggttga 686
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 1285 ttctgatcgctagag-tctcgggttattctagtttcatttaattc-tttctcgtggttga 1342
Query: 687 gattattcacatttacataggaattg 712
||||| ||||| ||||||||||||||
Sbjct: 1343 gatta-tcacaattacataggaattg 1367
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7075
Number of Sequences: 1807
Number of extensions: 7075
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)