BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG08RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1226 973 0.0
3x_Contig755 220 4e-57
>3x_Contig1226
Length = 5066
Score = 973 bits (491), Expect = 0.0
Identities = 576/597 (96%), Gaps = 6/597 (1%)
Strand = Plus / Plus
Query: 229 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 60
Query: 289 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 120
Query: 349 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 180
Query: 409 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 240
Query: 469 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 300
Query: 529 gaatgtagatattgttattgaagttatcggatttatccatcatttcgacagttttcattg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaatgtagatattgttattgaagttatcggatttatccatcatttcgacagttttcattg 360
Query: 589 gatcaagaccatatcccagactcgcgcgtttacgcattattaaacttatatcatntctgt 648
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 361 gatcaagaccatatcccagactcgcgcgtttacgcattataaaacttatatcat-tctgt 419
Query: 649 -acagcttctctgccttgatgtaaaactcttttacgtcttcag-atcacttcagtattcg 706
||||||||||||||| ||||||||||||||| |||||||||| |||||| |||| |||
Sbjct: 420 aacagcttctctgcctcgatgtaaaactctttaacgtcttcagaatcactcaagtaatcg 479
Query: 707 -cgtcatcttccatacttncggatgattttntttcatccagagtt-atatctttcagtca 764
||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 480 ccgtcatcttccatacttccggatgattttttttcatccagagttaatatcttcaagtca 539
Query: 765 ttttctgtattcaggtctttgaaagac-agttttttagcccgggatctaaattttcc 820
| | |||||| |||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct: 540 tctcctgtatccaggtcttcgaaagacaagttttttagcccggtatctaaattttcc 596
>3x_Contig755
Length = 2473
Score = 220 bits (111), Expect = 4e-57
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 47 ataacctgcaatggccgcagcaatgagtctaagacgttctttatttgcagatcccaaaat 106
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 2304 ataacctgcaatggccgcagcaatgagtctaagacgttcattatttgcacatcccaaaat 2363
Query: 107 agatatagctttctgaacgtcaccgaagaagacagcccaggcagcagctttctcatagtg 166
| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 acatatagcattcacaaagtcaccgaagaagacagcccaggcagcagctttctcatagtg 2423
Query: 167 attttgagctattagtgatttatattt 193
||||| |||||||||||||||| ||||
Sbjct: 2424 attttcagctattagtgatttacattt 2450
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6239
Number of Sequences: 1807
Number of extensions: 6239
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)