BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC44ZG09FM1.SCF screened BAC_end
         (906 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1802                                                        1045   0.0  

>3x_Contig1802 
          Length = 45229

 Score = 1045 bits (527), Expect = 0.0
 Identities = 594/611 (97%), Gaps = 4/611 (0%)
 Strand = Plus / Minus

                                                                         
Query: 84    tctctgtgtatattcttatctcatcaataataaacacgaagctaagggtacactgcttct 143
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40633 tctctgtgtatattcttatctcatcaataataaacacgaagctaagggtacactgcttct 40574

                                                                         
Query: 144   aatcacggcatatgttgctcgtagttaccttaaatctcttggcaattgggacgaaaatgg 203
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40573 aatcacggcatatgttgctcgtagttaccttaaatctcttggcaattgggacgaaaatgg 40514

                                                                         
Query: 204   aatgcgggatttttcaataatagtgagaaaggtgctattcttgcggtatttgcattcctc 263
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40513 aatgcgggatttttcaataatagtgagaaaggtgctattcttgcggtatttgcattcctc 40454

                                                                         
Query: 264   gcagttattgcagtaacaatatttgagtcggcgattaagcttccaattattcgggtccaa 323
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40453 gcagttattgcagtaacaatatttgagtcggcgattaagcttccaattattcgggtccaa 40394

                                                                         
Query: 324   cttcaagtggtgtgcgagacaaaaagttttgggacctttcaaaaattgtgtaacgatttt 383
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393 cttcaagtggtgtgcgagacaaaaagttttgggacctttcaaaaattgtgtaacgatttt 40334

                                                                         
Query: 384   cttccaacttcacttgtaaagcattgcatatatatgtgatattattcacttcgaaccagc 443
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40333 cttccaacttcacttgtaaagcattgcatatatatgtgatattattcacttcgaaccagc 40274

                                                                         
Query: 444   caattcgtcagaaaatgttaataccatcttagtttcttgttcgggcttcttcataattat 503
             |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 40273 caattcgtcagaaaatgttaataccatctaggtttcttgttcgggcttcttcataattat 40214

                                                                         
Query: 504   tgcaattcatctcgcctattagtaactcgggtgaaatctattttgtgattataggtttca 563
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40213 tgcaattcatctcgcctattagtaactcgggtgaaatctattttgtgattataggtttca 40154

                                                                         
Query: 564   ccatttcaacaagattatcatgagtcagga-aaatctc-aaattcgcttcat-aagtttc 620
             ||||||||||||||| ||||||||||| || ||||||| ||| ||||||||| |||||||
Sbjct: 40153 ccatttcaacaagatgatcatgagtcaagataaatctcaaaactcgcttcataaagtttc 40094

                                                                         
Query: 621   ttcattttaatctttgaaacttactctgattaaa-tcctcatcttaatttgggccttttt 679
             | ||||| | |||| ||||||||||||||||||| ||||||||||| |||| | ||| ||
Sbjct: 40093 tccatttaagtcttggaaacttactctgattaaattcctcatcttattttgtgtcttctt 40034

                        
Query: 680   tggattgatca 690
             |||||||||||
Sbjct: 40033 tggattgatca 40023


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8658
Number of Sequences: 1807
Number of extensions: 8658
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)