BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1045 0.0
>3x_Contig1660
Length = 13166
Score = 1045 bits (527), Expect = 0.0
Identities = 623/649 (95%), Gaps = 5/649 (0%)
Strand = Plus / Minus
Query: 50 atcacccaattgcaagcgagcgtattcattgttcagtagatcttttggagtttctttgat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 atcacccaattgcaagcgagcgtattcattgttcagtagatcttttggagtttctttgat 5715
Query: 110 aactaaggtatcgtagtcatagtttcgaatcttctctttattttgctcgatgaatgaata 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 aactaaggtatcgtagtcatagtttcgaatcttctctttattttgctcgatgaatgaata 5655
Query: 170 tacaccgcttgtatcagaagactcagcttcgtagcttttcaatccatgagtgtaatttcc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5654 tacaccgcttgtatcagaagactcagcttcgtagcttttcaatccatgagtgtaatttcc 5595
Query: 230 tgcaactacagctttctccttaccatcatatataatgacattgtcgtacactatgtcatc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5594 tgcaactacagctttctccttaccatcatatataatgacattgtcgtacactatgtcatc 5535
Query: 290 tgagtctatgtttagatcattacgtcgttgatgcctagaatgtcttcttaatcggggaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5534 tgagtctatgtttagatcattacgtcgttgatgcctagaatgtcttcttaatcggggaaa 5475
Query: 350 aaatttaggactagattcttggtccctgggtgttgtagcgggtttactttcgggactctg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474 aaatttaggactagattcttggtccctgggtgttgtagcgggtttactttcgggactctg 5415
Query: 410 aggtagttgcttgggcagtttggtcttaattactggagagctcttctcgcttggactttg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5414 aggtagttgcttgggcagtttggtcttaattactggagagctcttctcgcttggactttg 5355
Query: 470 tgggcttttcanaggtactatacggccacttgatggcaaaaattcgatgtctactatgaa 529
||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 5354 tgggcttttcaaaggtataatagggccacttgatgggaaaaattcgatgtctactatgaa 5295
Query: 530 ttggacatctcttgtcagtgaagtcaattcaccagactttcaaacgacataatattctgc 589
|||||||||| ||| |||||| |||||||| ||||||| |||||||||||||||||| |
Sbjct: 5294 ttggacatcttttgcaagtgaattcaattcaacagacttccaaacgacataatattct-c 5236
Query: 590 ttagtgctttaggtctcaaattcgttgataattaataaaatcctggncttaggacgtccc 649
||||||||||||||||| |||| |||||| |||||||||||||||| | |||||||||||
Sbjct: 5235 ttagtgctttaggtctc-aatttgttgat-attaataaaatcctggtc-taggacgtccc 5179
Query: 650 ttccggcgacacctataaagatcatctttaaatcgtggccttcgcctaa 698
|||| ||||| | | |||||||| || |||||||||||||||||||
Sbjct: 5178 -tccgtcgacaaccaagaagatcattcttcaatcgtggccttcgcctaa 5131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6068
Number of Sequences: 1807
Number of extensions: 6068
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)