BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG10FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 948 0.0
>3x_Contig1699
Length = 18038
Score = 948 bits (478), Expect = 0.0
Identities = 593/621 (95%), Gaps = 9/621 (1%)
Strand = Plus / Minus
Query: 87 tgggatacggcaggacaggaagaattcgacaggttgcgatcgttatcatacagtgacaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2852 tgggatacggcaggacaggaagaattcgacaggttgcgatcgttatcatacagtgacaca 2793
Query: 147 catactattatgttgtgtttttcggtagattcaagggactcgctagagaacgttcaaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 catactattatgttgtgtttttcggtagattcaagggactcgctagagaacgttcaaaat 2733
Query: 207 aaatgggttggcgaaatcgcagatcattgtgaaggtgtgaaattagtacttgtagcgtta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2732 aaatgggttggcgaaatcgcagatcattgtgaaggtgtgaaattagtacttgtagcgtta 2673
Query: 267 aaatgtgatttaagaaatttggaaagagttcgggaaacgaatctgctgccatttacccag 326
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 2672 aaatgtgatttaagaaatttgg-aagagttcggg-aacgaatctgctgccattaccccag 2615
Query: 327 gctctatt-agaacaggaatagtaacgcttaggataatggattgattagttacgaagaag 385
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2614 gctctattcagaacaggaatagtaacgctaaggataatggattgattagttacgaagaag 2555
Query: 386 gtttggatatggcgaagaaaaatcgtgcattgcgctacttggaatgcagcgccaaaatga 445
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2554 gtttggatatggcgaagaaaatcggtgcattgcgctacttggaatgcagcgccaaaatga 2495
Query: 446 atagaggtgtcaacgaggcattcaccgaagctgctcgttgtgcattgactgcaactccaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 atagaggtgtcaacgaggcattcaccgaagctgctcgttgtgcattgactgcaactccaa 2435
Query: 506 agggggcgaatgataccatccccttca-gataaaagaagcagttgtattattatgtgatc 564
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct: 2434 agggggcgaatgataccatccc--tcaggataaaggaagcagttgtattattatgtgatc 2377
Query: 565 ttattaaattaacaactacacttacttacgttaagacggaataaaataccaggatatttt 624
|||| |||| | |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 2376 ttataaaataacaaactacacttacttacgttaagacggaatagaataccaggataataa 2317
Query: 625 tgcagtaaccgttttactttcgggagaaaaattgagggaaaagacttacttgaatatagc 684
|||||||| || ||||| ||||||||||||| |||||| ||||||| || ||||||||||
Sbjct: 2316 tgcagtaa-cggtttac-ttcgggagaaaaa-tgaggggaaagactaacatgaatatagc 2260
Query: 685 taatgttttcgcttcttcttc 705
|||||||||||||||||||||
Sbjct: 2259 taatgttttcgcttcttcttc 2239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9394
Number of Sequences: 1807
Number of extensions: 9394
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)