BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG10RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1207 0.0
>3x_Contig1642
Length = 16641
Score = 1207 bits (609), Expect = 0.0
Identities = 732/771 (94%), Gaps = 2/771 (0%)
Strand = Plus / Plus
Query: 47 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 2663
Query: 107 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 2723
Query: 167 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 2783
Query: 227 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 2843
Query: 287 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagcccgttggttgtat 346
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2844 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 2903
Query: 347 ccatgatatttgttgaactgttcgctcatagatccgtcggtacttacatgctcgttaact 406
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 2904 ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 2963
Query: 407 ttgcttaggaatgaatcaccgtatttgaatattgtgtacaacgtttggttgaacgctaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 ttgcttaggaatgaatcaccgtatttgaatattgtgtacaacgtttggttgaacgctaat 3023
Query: 467 gtattatatggtatcaagatcagcgaatccttcatattgccaaattcggagaatttagtc 526
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 3024 gtattatatggtatcaagatcagcgaatccttcatattcccaaattcgaagaatttagtc 3083
Query: 527 cacaacttgttcgatatcggatcaatgagtaaaggtttctcatcgtgatacattttattg 586
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 cagaacttgttcgatatcggatcaatgagtaaaggtttctcatcgtgatacattttattg 3143
Query: 587 actaaattgtaaatccattcagcagacgttaacgttgagatacaccagggattaccttca 646
||||| ||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct: 3144 actaatttgtaaatcaattcggcagaggttaacgttgagataaaccagggattaccttca 3203
Query: 647 gagatgtcaattncatcataaatatcctctggatatctagcaatggcaactaccatgtta 706
|||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 3204 gagatgtcaattccatcataaatatcctctggatatctcccaatggcaactcccatgttt 3263
Query: 707 gtatatagtctgctgnagactgatcgggataagtactgccattctggtcattagttcatt 766
|||| |||||| || || |||||||| ||||||||||||||| ||||||||| |
Sbjct: 3264 gtattaagtctgttgt-gattgatcgggtaaagtactgccattctctcaattagttca-t 3321
Query: 767 tgaaagaattcatttgaaaaggatcatcaatctcacacaggaaagaatcat 817
||||| ||||| | |||||||||||||| ||| ||| ||| |||||||
Sbjct: 3322 tgaaatgattcaatatgaaaggatcatcaatatcaaacaagaaggaatcat 3372
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6684
Number of Sequences: 1807
Number of extensions: 6684
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)