BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC44ZG11FM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1360 640 0.0
>3x_Contig1360
Length = 8285
Score = 640 bits (323), Expect = 0.0
Identities = 422/447 (94%), Gaps = 6/447 (1%)
Strand = Plus / Minus
Query: 88 tatctctttcgataaaaacttcattgcccaaaatgagaggagatttagggagaatggacc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7778 tatctctttcgataaaaacttcattgcccaaaatgagaggagatttagggagaatggacc 7719
Query: 148 tcaaagagttgggagaggcaacactgtagtttcttgttatactaattctgccacttgtgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7718 tcaaagagttgggagaggcaacactgtagtttcttgttatactaattctgccacttgtgg 7659
Query: 208 gtcttctaatttgggcgttgttttgacattgggtatcaatttcagacgtactttcttcat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7658 gtcttctaatttgggcgttgttttgacattgggtatcaatttcagacgtactttcttcat 7599
Query: 268 atgcagttattaacgatgcaatatctttatttttcgttttcatactcatcttggatagca 327
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 7598 atgcagttattaacgatgcaatatcttca-ttttcgttttcatactcatcttggatagca 7540
Query: 328 ttatcatttgcatcactttccatggaagttgcactcgtctccgttgcttcttctattttg 387
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 7539 ttatcatttgcatcactttccattgaagttgcactcgtctccgttgcttc-tctattttg 7481
Query: 388 tgtgaaacaggatttgtattttgtcaaataggatttctcgaaattgaacctaccgaagtt 447
|| |||||||| ||| | |||| ||| ||||||||||||||||||||| ||||| |
Sbjct: 7480 tggtgaacaggatctgtcatctgtcgaatcagatttctcgaaattgaaccta-cgaaggt 7422
Query: 448 catt-acattcagcttttcttttc-aagttggggcagaacccatgaaaatattactactt 505
|||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 7421 cattaacattcagc-tttcttttcaaagttggggcagattccatgaaaatattactactc 7363
Query: 506 cctttatgttgactaaaaattttccca 532
|||||||||||||| || || ||||||
Sbjct: 7362 cctttatgttgactcaagatattccca 7336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,071
Number of Sequences: 1807
Number of extensions: 22071
Number of successful extensions: 366
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)